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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2020-04-09 16:17:02 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2020-04-09 16:17:02 +0000 |
| commit | e276fc2c71868cb51c94afe363499b2fff591d65 (patch) | |
| tree | 0475a6ad0bc7dc2201aa065940005023ca64ff29 /biology/fastp | |
| parent | a950d5ce58c28b70cab89b45bff0c946f4dacef7 (diff) | |
| download | ports-e276fc2c71868cb51c94afe363499b2fff591d65.tar.gz ports-e276fc2c71868cb51c94afe363499b2fff591d65.zip | |
biology/fastp: Upgrade to 0.20.1
Fix the plotly.js CDN issue
Reported by: portscout
Notes
Notes:
svn path=/head/; revision=531215
Diffstat (limited to 'biology/fastp')
| -rw-r--r-- | biology/fastp/Makefile | 3 | ||||
| -rw-r--r-- | biology/fastp/distinfo | 6 | ||||
| -rw-r--r-- | biology/fastp/files/patch-Makefile | 14 |
3 files changed, 15 insertions, 8 deletions
diff --git a/biology/fastp/Makefile b/biology/fastp/Makefile index 56a2a0a8e5db..05fc93bc3f69 100644 --- a/biology/fastp/Makefile +++ b/biology/fastp/Makefile @@ -2,8 +2,7 @@ PORTNAME= fastp DISTVERSIONPREFIX= v -DISTVERSION= 0.20.0 -PORTREVISION= 1 +DISTVERSION= 0.20.1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/fastp/distinfo b/biology/fastp/distinfo index f4dfed098b2a..03340a5edea3 100644 --- a/biology/fastp/distinfo +++ b/biology/fastp/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1556889058 -SHA256 (OpenGene-fastp-v0.20.0_GH0.tar.gz) = 8d751d2746db11ff233032fc49e3bcc8b53758dd4596fdcf4b4099a4d702ac22 -SIZE (OpenGene-fastp-v0.20.0_GH0.tar.gz) = 139422 +TIMESTAMP = 1586443273 +SHA256 (OpenGene-fastp-v0.20.1_GH0.tar.gz) = e1b663717850bed7cb560c0c540e9a05dd9448ec76978faaf853a6959fd5b1b3 +SIZE (OpenGene-fastp-v0.20.1_GH0.tar.gz) = 139703 diff --git a/biology/fastp/files/patch-Makefile b/biology/fastp/files/patch-Makefile index 299803a61494..595fdc96c6e6 100644 --- a/biology/fastp/files/patch-Makefile +++ b/biology/fastp/files/patch-Makefile @@ -1,4 +1,4 @@ ---- Makefile.orig 2019-04-17 03:23:22 UTC +--- Makefile.orig 2020-04-08 07:26:52 UTC +++ Makefile @@ -3,9 +3,11 @@ DIR_SRC := ./src DIR_OBJ := ./obj @@ -12,7 +12,7 @@ SRC := $(wildcard ${DIR_SRC}/*.cpp) OBJ := $(patsubst %.cpp,${DIR_OBJ}/%.o,$(notdir ${SRC})) -@@ -15,7 +17,8 @@ TARGET := fastp +@@ -15,13 +17,14 @@ TARGET := fastp BIN_TARGET := ${TARGET} CXX ?= g++ @@ -20,8 +20,16 @@ +CXXFLAGS ?= -g -O3 +CXXFLAGS += -std=c++11 -I${DIR_INC} $(foreach includedir,$(INCLUDE_DIRS),-I$(includedir)) LIBS := -lz -lpthread - LD_FLAGS := $(foreach librarydir,$(LIBRARY_DIRS),-L$(librarydir)) $(LIBS) $(LD_FLAGS) +-LD_FLAGS := $(foreach librarydir,$(LIBRARY_DIRS),-L$(librarydir)) $(LIBS) $(LD_FLAGS) ++LDFLAGS += $(foreach librarydir,$(LIBRARY_DIRS),-L$(librarydir)) $(LIBS) + + ${BIN_TARGET}:${OBJ} +- $(CXX) $(OBJ) -o $@ $(LD_FLAGS) ++ $(CXX) $(OBJ) -o $@ $(LDFLAGS) + + ${DIR_OBJ}/%.o:${DIR_SRC}/%.cpp make_obj_dir + $(CXX) -c $< -o $@ $(CXXFLAGS) @@ -38,5 +41,8 @@ make_obj_dir: fi |