diff options
author | Jason W. Bacon <jwb@FreeBSD.org> | 2017-11-30 22:54:29 +0000 |
---|---|---|
committer | Jason W. Bacon <jwb@FreeBSD.org> | 2017-11-30 22:54:29 +0000 |
commit | eb53d36e451e7f1ce4b8ae19abb04161c911318a (patch) | |
tree | c64dc04f7feea4fc8ce9966f08234e7d3b6de75e /biology/fastqc/pkg-plist | |
parent | a64acd4f68ff22f66d8c7289a72248ba4590b91a (diff) | |
download | ports-eb53d36e451e7f1ce4b8ae19abb04161c911318a.tar.gz ports-eb53d36e451e7f1ce4b8ae19abb04161c911318a.zip |
Notes
Diffstat (limited to 'biology/fastqc/pkg-plist')
-rw-r--r-- | biology/fastqc/pkg-plist | 206 |
1 files changed, 206 insertions, 0 deletions
diff --git a/biology/fastqc/pkg-plist b/biology/fastqc/pkg-plist new file mode 100644 index 000000000000..ffbb0338d11e --- /dev/null +++ b/biology/fastqc/pkg-plist @@ -0,0 +1,206 @@ +bin/fastqc +%%DATADIR%%/Configuration/adapter_list.txt +%%DATADIR%%/Configuration/contaminant_list.txt +%%DATADIR%%/Configuration/limits.txt +%%DATADIR%%/Help/1 Introduction/1.1 What is FastQC.html +%%DATADIR%%/Help/2 Basic Operations/2.1 Opening a sequence file.html +%%DATADIR%%/Help/2 Basic Operations/2.2 Evaluating Results.html +%%DATADIR%%/Help/2 Basic Operations/2.3 Saving a Report.html +%%DATADIR%%/Help/3 Analysis Modules/1 Basic Statistics.html +%%DATADIR%%/Help/3 Analysis Modules/10 Adapter Content.html +%%DATADIR%%/Help/3 Analysis Modules/11 Kmer Content.html +%%DATADIR%%/Help/3 Analysis Modules/12 Per Tile Sequence Quality.html +%%DATADIR%%/Help/3 Analysis Modules/2 Per Base Sequence Quality.html +%%DATADIR%%/Help/3 Analysis Modules/3 Per Sequence Quality Scores.html +%%DATADIR%%/Help/3 Analysis Modules/4 Per Base Sequence Content.html +%%DATADIR%%/Help/3 Analysis Modules/5 Per Sequence GC Content.html +%%DATADIR%%/Help/3 Analysis Modules/6 Per Base N Content.html +%%DATADIR%%/Help/3 Analysis Modules/7 Sequence Length Distribution.html +%%DATADIR%%/Help/3 Analysis Modules/8 Duplicate Sequences.html +%%DATADIR%%/Help/3 Analysis Modules/9 Overrepresented Sequences.html +%%DATADIR%%/Help/3 Analysis Modules/duplication_levels.png +%%DATADIR%%/Help/3 Analysis Modules/kmer_profiles.png +%%DATADIR%%/Help/3 Analysis Modules/per_base_gc_content.png +%%DATADIR%%/Help/3 Analysis Modules/per_base_n_content.png +%%DATADIR%%/Help/3 Analysis Modules/per_base_quality.png +%%DATADIR%%/Help/3 Analysis Modules/per_base_sequence_content.png +%%DATADIR%%/Help/3 Analysis Modules/per_sequence_gc_content.png +%%DATADIR%%/Help/3 Analysis Modules/per_sequence_quality.png +%%DATADIR%%/Help/3 Analysis Modules/per_tile_quality.png +%%DATADIR%%/Help/3 Analysis Modules/sequence_length_distribution.png +%%DATADIR%%/Templates/Icons/error.png +%%DATADIR%%/Templates/Icons/fastqc_icon.png +%%DATADIR%%/Templates/Icons/tick.png +%%DATADIR%%/Templates/Icons/warning.png +%%DATADIR%%/Templates/fastqc2fo.xsl +%%DATADIR%%/Templates/header_template.html +%%JAVAJARDIR%%/fastqc/cisd-jhdf5.jar +%%JAVAJARDIR%%/fastqc/jbzip2-0.9.jar +%%JAVAJARDIR%%/fastqc/net/sourceforge/iharder/base64/Base64$1.class +%%JAVAJARDIR%%/fastqc/net/sourceforge/iharder/base64/Base64$InputStream.class +%%JAVAJARDIR%%/fastqc/net/sourceforge/iharder/base64/Base64$OutputStream.class +%%JAVAJARDIR%%/fastqc/net/sourceforge/iharder/base64/Base64.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/analysis/UnivariateFunction.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/analysis/solvers/AbstractUnivariateSolver.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/analysis/solvers/AllowedSolution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/analysis/solvers/BaseAbstractUnivariateSolver.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/analysis/solvers/BaseUnivariateSolver.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/analysis/solvers/BracketedUnivariateSolver.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/analysis/solvers/BrentSolver.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolver.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolverUtils.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/AbstractIntegerDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution$1.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/BetaDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/BinomialDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/CauchyDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/ChiSquaredDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/FDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/GammaDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/HypergeometricDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/IntegerDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/NormalDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/PascalDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/PoissonDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/RealDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/SaddlePointExpansion.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/TDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/WeibullDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/distribution/ZipfDistribution.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/ConvergenceException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/DimensionMismatchException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/MathArithmeticException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/MathIllegalArgumentException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/MathIllegalNumberException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/MathIllegalStateException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/MathInternalError.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/MaxCountExceededException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/NoBracketingException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/NotFiniteNumberException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/NotPositiveException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/NotStrictlyPositiveException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/NullArgumentException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/NumberIsTooLargeException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/NumberIsTooSmallException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/OutOfRangeException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/TooManyEvaluationsException.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/util/ArgUtils.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/util/ExceptionContext.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/util/ExceptionContextProvider.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/util/Localizable.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/exception/util/LocalizedFormats.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/random/AbstractWell.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/random/BitsStreamGenerator.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/random/RandomData.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/random/RandomDataImpl.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/random/RandomGenerator.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/random/Well19937c.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/special/Beta$1.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/special/Beta.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/special/Erf.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/special/Gamma$1.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/special/Gamma.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/ArithmeticUtils.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/ContinuedFraction.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/DoubleArray.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/FastMath$ExpFracTable.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/FastMath$ExpIntTable.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/FastMath$lnMant.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/FastMath.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/FastMathCalc.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/FastMathLiteralArrays.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/Incrementor$1.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/Incrementor$MaxCountExceededCallback.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/Incrementor.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/MathUtils.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/Precision.class +%%JAVAJARDIR%%/fastqc/org/apache/commons/math3/util/ResizableDoubleArray.class +%%JAVAJARDIR%%/fastqc/sam-1.103.jar +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisListener.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisQueue.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisRunner.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Analysis/OfflineRunner.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog$1.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel$SmoothJLabel.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Dialogs/WelcomePanel.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/FastQCApplication$1.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/FastQCApplication.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/FastQCConfig.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/FastQCMenuBar.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/FileFilters/BAMFileFilter.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/FileFilters/CasavaFastQFileFilter.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/FileFilters/FastQFileFilter.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/FileFilters/GobyFileFilter.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/FileFilters/MappedBAMFileFilter.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/FileFilters/SequenceFileFilter.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Graphs/BaseGroup.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Graphs/LineGraph.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Graphs/QualityBoxPlot.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Graphs/TileGraph.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Help/HelpDialog.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot$FileSorter.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Help/HelpPage.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay$HelpEditor.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Help/HelpSearchPanel.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/AbstractQCModule.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$Adapter.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$ResultsTable.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats$ResultsTable.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/DuplicationLevel.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModel.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModelValue.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$Kmer.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$ResultsTable.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/ModuleConfig.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/ModuleFactory.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/NContent.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$OverrepresentedSeq.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$ResultsTable.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseQualityScores.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseSequenceContent.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceGCContent.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceQualityScores.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/PerTileQualityScores.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/QCModule.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Modules/SequenceLengthDistribution.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Report/HTMLReportArchive.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Report/stylesheet.txt +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Resources/error.png +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.png +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.svg +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon_100.png +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Resources/tick.png +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Resources/warning.png +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel$ModuleRenderer.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/BAMFile.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/Contaminant.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminantHit.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminentFinder.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/Fast5File.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/FastQFile.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/QualityEncoding/PhredEncoding.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/Sequence.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFactory.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFile.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFileGroup.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFormatException.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Statistics/NormalDistribution.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Statistics/PearsonCorrelation.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Utilities/CasavaBasename.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Utilities/HotColdColourGradient.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Utilities/ImageToBase64.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Utilities/MultiMemberGZIPInputStream.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Utilities/NameFormatException.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Utilities/NanoporeBasename.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Utilities/QualityCount.class +%%JAVAJARDIR%%/fastqc/uk/ac/babraham/FastQC/Utilities/RGB.class |