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| author | Stefan Eßer <se@FreeBSD.org> | 2020-09-21 18:14:57 +0000 |
|---|---|---|
| committer | Stefan Eßer <se@FreeBSD.org> | 2020-09-21 18:14:57 +0000 |
| commit | 136b2d0c4cb83bfc575f0bd1de9996b504236747 (patch) | |
| tree | 8017fc8de226781c6d260cdd6f4a77402197043d /biology/freebayes | |
| parent | 59a3db42193deff1679a193bff124e1c6cb0a068 (diff) | |
| download | ports-136b2d0c4cb83bfc575f0bd1de9996b504236747.tar.gz ports-136b2d0c4cb83bfc575f0bd1de9996b504236747.zip | |
Fix build with -fno-common
Notes
Notes:
svn path=/head/; revision=549476
Diffstat (limited to 'biology/freebayes')
| -rw-r--r-- | biology/freebayes/Makefile | 2 | ||||
| -rw-r--r-- | biology/freebayes/files/patch-SeqLib_bwa_rle.h | 11 | ||||
| -rw-r--r-- | biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h | 11 |
3 files changed, 23 insertions, 1 deletions
diff --git a/biology/freebayes/Makefile b/biology/freebayes/Makefile index a7032ea4cfb4..9bdbeb825507 100644 --- a/biology/freebayes/Makefile +++ b/biology/freebayes/Makefile @@ -3,7 +3,7 @@ PORTNAME= freebayes DISTVERSIONPREFIX= v DISTVERSION= 1.2.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/freebayes/files/patch-SeqLib_bwa_rle.h b/biology/freebayes/files/patch-SeqLib_bwa_rle.h new file mode 100644 index 000000000000..1e6b9580e7c0 --- /dev/null +++ b/biology/freebayes/files/patch-SeqLib_bwa_rle.h @@ -0,0 +1,11 @@ +--- SeqLib/bwa/rle.h.orig 2016-10-13 18:10:17 UTC ++++ SeqLib/bwa/rle.h +@@ -30,7 +30,7 @@ extern "C" { + *** 43+3 codec *** + ******************/ + +-const uint8_t rle_auxtab[8]; ++extern const uint8_t rle_auxtab[8]; + + #define RLE_MIN_SPACE 18 + #define rle_nptr(block) ((uint16_t*)(block)) diff --git a/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h b/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h new file mode 100644 index 000000000000..6ad88b47fde5 --- /dev/null +++ b/biology/freebayes/files/patch-SeqLib_fermi-lite_rle.h @@ -0,0 +1,11 @@ +--- SeqLib/fermi-lite/rle.h.orig 2016-09-01 20:47:53 UTC ++++ SeqLib/fermi-lite/rle.h +@@ -30,7 +30,7 @@ extern "C" { + *** 43+3 codec *** + ******************/ + +-const uint8_t rle_auxtab[8]; ++extern const uint8_t rle_auxtab[8]; + + #define RLE_MIN_SPACE 18 + #define rle_nptr(block) ((uint16_t*)(block)) |