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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2020-02-09 05:57:04 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2020-02-09 05:57:04 +0000 |
| commit | 8b908b1f84a5650d6336294f779e6d146b2b10e7 (patch) | |
| tree | 503fef22432d7a1da69be43632e8daf1bfd66956 /biology/gatk/Makefile | |
| parent | 235a81d83cdb34c11be89b5e6c7bfea9b4bcf6fb (diff) | |
| download | ports-8b908b1f84a5650d6336294f779e6d146b2b10e7.tar.gz ports-8b908b1f84a5650d6336294f779e6d146b2b10e7.zip | |
Notes
Diffstat (limited to 'biology/gatk/Makefile')
| -rw-r--r-- | biology/gatk/Makefile | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile index aea96bcff0a2..a17f7b426d87 100644 --- a/biology/gatk/Makefile +++ b/biology/gatk/Makefile @@ -2,6 +2,7 @@ PORTNAME= gatk DISTVERSION= 4.1.4.1 +PORTREVISION= 1 CATEGORIES= biology java EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} @@ -11,7 +12,7 @@ COMMENT= Variant discovery in high-throughput sequencing data LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.TXT -BUILD_DEPENDS= gradle5:devel/gradle5 +BUILD_DEPENDS= gradle:devel/gradle USES= gettext-runtime USE_GITHUB= yes @@ -23,7 +24,7 @@ SUB_LIST= PORTVERSION=${PORTVERSION} JAVA=${JAVA} NO_ARCH= yes -DEPS_CACHE_DIR= /tmp # should be ${WRKDIR}, but workaround for the gradle bug that dependency cache is not relocable: https://github.com/gradle/gradle/issues/1338 +DEPS_CACHE_DIR= ${WRKDIR} PLIST_FILES= bin/${PORTNAME} \ ${JAVAJARDIR}/GenomeAnalysisTK-${PORTVERSION}.jar @@ -52,7 +53,7 @@ post-extract: # need a separate extract step because the cache is in /tmp, and n do-build: - @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle5 \ + @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle \ --gradle-user-home ${DEPS_CACHE_DIR}/gradle-${PORTNAME} --project-cache-dir ${DEPS_CACHE_DIR}/gradle-${PORTNAME} \ ${GRADLE_ARGS} --build-cache localJar |