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| author | Sergey Matveychuk <sem@FreeBSD.org> | 2004-11-25 22:35:52 +0000 |
|---|---|---|
| committer | Sergey Matveychuk <sem@FreeBSD.org> | 2004-11-25 22:35:52 +0000 |
| commit | 3b1950174468942bd06f5248d30f7bb16ac740f6 (patch) | |
| tree | d71cb0eef2f2567e0415a23c994f5500174019b1 /biology/hmmer/Makefile | |
| parent | dc5dd31002e61348ab7327575b7899b0b85f09dc (diff) | |
| download | ports-3b1950174468942bd06f5248d30f7bb16ac740f6.tar.gz ports-3b1950174468942bd06f5248d30f7bb16ac740f6.zip | |
Notes
Diffstat (limited to 'biology/hmmer/Makefile')
| -rw-r--r-- | biology/hmmer/Makefile | 31 |
1 files changed, 20 insertions, 11 deletions
diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile index f3e4aa53ce80..c4e8f4a422ac 100644 --- a/biology/hmmer/Makefile +++ b/biology/hmmer/Makefile @@ -6,24 +6,29 @@ # PORTNAME= hmmer -PORTVERSION= 2.2.g -PORTREVISION= 1 +PORTVERSION= 2.3.2 CATEGORIES= biology -MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/${VERSIONSTRING}/ -DISTNAME= ${PORTNAME}-${VERSIONSTRING} +MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/${PORTVERSION}/ -MAINTAINER= ports@FreeBSD.org +MAINTAINER= fernan@iib.unsam.edu.ar COMMENT= Profile hidden Markov models for biological sequence analysis GNU_CONFIGURE= yes USE_PERL5= yes -VERSIONSTRING= ${PORTVERSION:C|\.([^.]*)$|\1|} +CONFIGURE_ARGS+=--enable-threads --enable-lfs -DOCFILES= 00README COPYRIGHT NOTES Userguide.pdf -MAN1= afetch.1 alistat.1 hmmalign.1 hmmbuild.1 hmmcalibrate.1 \ - hmmconvert.1 hmmemit.1 hmmer.1 hmmfetch.1 hmmindex.1 \ - hmmpfam.1 hmmsearch.1 seqstat.1 sfetch.1 shuffle.1 \ - sreformat.1 +DOCFILES= 00README COPYRIGHT INSTALL LICENSE NOTES Userguide.pdf +EXAMPLES= 7LES_DROME amino.null globins50.msf nucleic.pri rrm.sto \ + Artemia.fa amino.pri globins630.fa pkinase.sto RU1A_HUMAN \ + fn3.sto nucleic.null rrm.hmm +MAN1= hmmalign.1 hmmbuild.1 hmmcalibrate.1 hmmconvert.1 hmmemit.1 \ + hmmer.1 hmmfetch.1 hmmindex.1 hmmpfam.1 hmmsearch.1 + +.if defined(WITH_PVM) +CONFIGURE_ENV+= PVM_ROOT="${LOCALBASE}/lib/pvm" PVM_ARCH="FREEBSD" +CONFIGURE_ARGS+= --with-pvm +BUILD_DEPENDS+= pvm:${PORTSDIR}/net/pvm +.endif post-install: .if !defined(NOPORTDOCS) @@ -32,6 +37,10 @@ post-install: @ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR} .endfor .endif + @ ${MKDIR} ${EXAMPLESDIR} +.for example in ${EXAMPLES} + @ ${INSTALL_DATA} ${WRKSRC}/tutorial/${example} ${EXAMPLESDIR} +.endfor .if !defined(BATCH) @ ${CAT} ${PKGMESSAGE} .endif |