diff options
author | Wen Heping <wen@FreeBSD.org> | 2014-05-13 02:46:25 +0000 |
---|---|---|
committer | Wen Heping <wen@FreeBSD.org> | 2014-05-13 02:46:25 +0000 |
commit | f6d9105f6a3375e7a4bde86e70203771867e1577 (patch) | |
tree | ec488d609113d1948fa456271e923099c5655477 /biology/libsbml/pkg-plist | |
parent | eab7bf5544bd12caea09e53a0df47bf5b3e673aa (diff) | |
download | ports-f6d9105f6a3375e7a4bde86e70203771867e1577.tar.gz ports-f6d9105f6a3375e7a4bde86e70203771867e1577.zip |
Notes
Diffstat (limited to 'biology/libsbml/pkg-plist')
-rw-r--r-- | biology/libsbml/pkg-plist | 272 |
1 files changed, 248 insertions, 24 deletions
diff --git a/biology/libsbml/pkg-plist b/biology/libsbml/pkg-plist index 2bbf58df8333..e4ae42a570dd 100644 --- a/biology/libsbml/pkg-plist +++ b/biology/libsbml/pkg-plist @@ -42,8 +42,6 @@ include/sbml/annotation/ModelHistory.h include/sbml/annotation/RDFAnnotation.h include/sbml/common/common.h include/sbml/common/extern.h -include/sbml/common/libsbml-config-unix.h -include/sbml/common/libsbml-config-win.h include/sbml/common/libsbml-config.h include/sbml/common/libsbml-namespace.h include/sbml/common/libsbml-version.h @@ -91,7 +89,6 @@ include/sbml/validator/UnitConsistencyValidator.h include/sbml/validator/VConstraint.h include/sbml/validator/Validator.h include/sbml/validator/constraints/IdBase.h -include/sbml/validator/constraints/IdList.h include/sbml/validator/constraints/MathMLBase.h include/sbml/validator/constraints/OverDeterminedCheck.h include/sbml/validator/constraints/UniqueIdBase.h @@ -118,27 +115,68 @@ include/sbml/xml/XMLParser.h include/sbml/xml/XMLToken.h include/sbml/xml/XMLTokenizer.h include/sbml/xml/XMLTriple.h -lib/libsbml.so.6 +include/sbml/AlgebraicRule.h +include/sbml/AssignmentRule.h +include/sbml/ExpectedAttributes.h +include/sbml/ModifierSpeciesReference.h +include/sbml/RateRule.h +include/sbml/SBMLConstructorException.h +include/sbml/SimpleSpeciesReference.h +include/sbml/annotation/Date.h +include/sbml/annotation/ModelCreator.h +include/sbml/annotation/RDFAnnotationParser.h +include/sbml/common/libsbml-config-common.h +include/sbml/conversion/ConversionOption.h +include/sbml/conversion/ConversionProperties.h +include/sbml/conversion/SBMLConverter.h +include/sbml/conversion/SBMLConverterRegister.h +include/sbml/conversion/SBMLConverterRegistry.h +include/sbml/conversion/SBMLFunctionDefinitionConverter.h +include/sbml/conversion/SBMLIdConverter.h +include/sbml/conversion/SBMLInferUnitsConverter.h +include/sbml/conversion/SBMLInitialAssignmentConverter.h +include/sbml/conversion/SBMLLevelVersionConverter.h +include/sbml/conversion/SBMLLocalParameterConverter.h +include/sbml/conversion/SBMLRuleConverter.h +include/sbml/conversion/SBMLStripPackageConverter.h +include/sbml/conversion/SBMLUnitsConverter.h +include/sbml/extension/ISBMLExtensionNamespaces.h +include/sbml/extension/SBMLDocumentPlugin.h +include/sbml/extension/SBMLDocumentPluginNotRequired.h +include/sbml/extension/SBMLExtension.h +include/sbml/extension/SBMLExtensionException.h +include/sbml/extension/SBMLExtensionNamespaces.h +include/sbml/extension/SBMLExtensionRegister.h +include/sbml/extension/SBMLExtensionRegistry.h +include/sbml/extension/SBaseExtensionPoint.h +include/sbml/extension/SBasePlugin.h +include/sbml/extension/SBasePluginCreator.h +include/sbml/extension/SBasePluginCreatorBase.h +include/sbml/math/L3FormulaFormatter.h +include/sbml/math/L3Parser.h +include/sbml/math/L3ParserSettings.h +include/sbml/util/ElementFilter.h +include/sbml/util/IdFilter.h +include/sbml/util/IdList.h +include/sbml/util/IdentifierTransformer.h +include/sbml/util/MetaIdFilter.h +include/sbml/validator/SBMLExternalValidator.h +include/sbml/validator/SBMLInternalValidator.h +include/sbml/validator/SBMLValidator.h +include/sbml/xml/XMLConstructorException.h +include/sbml/xml/XMLLogOverride.h +lib/libsbml.so.14 lib/libsbml.so lib/libsbml.la lib/libsbml.a -@dirrm include/sbml/annotation -@dirrm include/sbml/common -@dirrm include/sbml/compress -@dirrm include/sbml/math -@dirrm include/sbml/units -@dirrm include/sbml/util -@dirrm include/sbml/validator/constraints -@dirrm include/sbml/validator -@dirrm include/sbml/xml -@dirrm include/sbml/ %%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/_libsbml.so -%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/libsbml.py -%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/libsbml.pyc %%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml.pth %%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/%%SBML_EGGINFO%% +%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/__init__.py +%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/__init__.pyc %%WITH_PYTHON%%@dirrm %%PYTHON_SITELIBDIR%%/libsbml -%%WITH_RUBY%%%%RUBY_SITEARCHLIBDIR%%/libSBML.so +%%WITH_RUBY%%%%RUBY_SITELIBDIR%%/%%RUBY_ARCH%%/libSBML.so +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/CMakeLists.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/README.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/FormulaGraphvizFormatter.h %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/Makefile @@ -153,6 +191,23 @@ lib/libsbml.a %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/translateMath.c %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/util.c %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/util.h +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/CMakeLists.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/addCVTerms.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/addModelHistory.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/addingEvidenceCodes_1.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/addingEvidenceCodes_2.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/appendAnnotation.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/createExampleSBML.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printAnnotation.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printNotes.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printRegisteredPackages.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printSupported.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printUnits.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/promoteParameters.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/stripPackage.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/translateL3Math.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/unsetAnnotation.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/unsetNotes.c %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/validateSBML.c %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/Makefile %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/Makefile.in @@ -176,10 +231,60 @@ lib/libsbml.a %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/util.c %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/util.h %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/validateSBML.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/CMakeLists.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addCustomValidator.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/callExternalValidator.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/getAllElementsWithNotes.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/inferUnits.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/inlineFunctionDefintions.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/Makefile.in +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/addLayout.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/convertLayout.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example1-L3.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example1.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example2-L3.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example2.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example3-L3.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/layout/example3.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printRegisteredPackages.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printSupported.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/promoteParameters.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/renameSId.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/rngvalidator.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/setIdFromNames.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/setNamesFromIds.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/stripPackage.cpp +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/translateL3Math.cpp %%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/Makefile %%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/Makefile.in %%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/echoSBML.cs %%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/validateSBML.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/CMakeLists.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/GetAllElementsWithNotes.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/SetIdFromNames.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/addCVTerms.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/addCustomValidator.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/addModelHistory.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/addingEvidenceCodes_1.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/addingEvidenceCodes_2.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/appendAnnotation.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/callExternalValidator.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/convertSBML.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/createExampleSBML.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/layout/example1-L3.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printAnnotation.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printMath.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printNotes.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printRegisteredPackages.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printSBML.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printUnits.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/printsupported.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/promoteParameters.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/readSBML.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/stripPackage.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/translateMath.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/unsetAnnotation.cs +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/unsetNotes.cs %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/Makefile %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/Makefile.in %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/README.txt @@ -199,13 +304,21 @@ lib/libsbml.a %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/unsetAnnotation.java %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/unsetNotes.java %%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/validateSBML.java -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/Makefile.in -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.java -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.py -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example2.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example3.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/layout2svg.xsl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/CMakeLists.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addCustomValidator.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addingEvidenceCodes_1.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addingEvidenceCodes_2.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/callExternalValidator.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/createExampleSBML.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/getAllElementsWithNotes.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/layout/layout_example1.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/layout/layout_example1_L3.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printRegisteredPackages.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printsupported.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/promoteParameters.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/setIdFromNames.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/stripPackage.java +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/README.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/convertSBML.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/evaluateMath.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/extractReactionInfo.pl @@ -215,12 +328,101 @@ lib/libsbml.a %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/readSBML.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/translateMath.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/validateSBML.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/addCVTerms.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/addCustomValidator.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/addModelHistory.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/addingEvidenceCodes_1.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/addingEvidenceCodes_2.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/appendAnnotation.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/callExternalValidator.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/createExampleSBML.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/echoSBML.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/layout/example1-L3.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printAnnotation.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printNotes.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printRegisteredPackages.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printUnits.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printsupported.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/promoteParameters.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/stripPackage.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/unsetAnnotation.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/unsetNotes.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/echoSBML.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/validateSBML.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/addCVTerms.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/addCustomValidator.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/addModelHistory.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/addingEvidenceCodes_1.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/addingEvidenceCodes_2.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/appendAnnotation.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/callExternalValidator.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/convertSBML.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/createExampleSBML.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/getAllElementsWithNotes.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/layout/example1-L3.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/layout/example1.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/printAnnotation.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/printMath.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/printNotes.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/printRegisteredPackages.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/printSBML.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/printUnits.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/printsupported.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/promoteParameters.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/readSBML.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/setIdFromNames.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/stripPackage.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/translateMath.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/unsetAnnotation.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/unsetNotes.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/addCVTerms.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/addModelHistory.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/addingEvidenceCodes_1.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/addingEvidenceCodes_2.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/appendAnnotation.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/convertSBML.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/createExampleSBML.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/echoSBML.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/evaluateMath.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/printAnnotation.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/printMath.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/printNotes.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/printRegisteredPackages.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/printSBML.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/printSupported.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/printUnits.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/promoteParameters.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/readSBML.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/stripPackage.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/translateMath.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/unsetAnnotation.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/unsetNotes.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/validateSBML.R %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/convertSBML.rb %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/echoSBML.rb %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/printMath.rb %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/validateSBML.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/addCVTerms.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/addCustomValidator.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/addModelHistory.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/addingEvidenceCodes_1.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/addingEvidenceCodes_2.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/appendAnnotation.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/callExternalValidator.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/createExampleSBML.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/printAnnotation.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/printNotes.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/printRegisteredPackages.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/printSBML.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/printUnits.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/printsupported.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/promoteParameters.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/readSBML.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/stripPackage.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/translateMath.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/unsetAnnotation.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/unsetNotes.rb +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/layout/example1-L3.rb %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/README.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/README.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/algebraicrules.xml @@ -252,16 +454,38 @@ lib/libsbml.a %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/README.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/twoalgebraicrules.xml %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/twodimensional.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/xslt/layout/layout2svg.xsl %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++/layout %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++ +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/csharp/layout %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/csharp +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/java/layout %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/java +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/perl/layout %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/layout %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/perl +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/python/layout %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/python +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/r +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/ruby/layout %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/ruby %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec/level-3 %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec/level-2 %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/xslt/layout +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/xslt %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%% +@dirrm include/sbml/annotation +@dirrm include/sbml/common +@dirrm include/sbml/compress +@dirrm include/sbml/conversion +@dirrm include/sbml/extension +@dirrm include/sbml/math +@dirrm include/sbml/units +@dirrm include/sbml/util +@dirrm include/sbml/validator/constraints +@dirrm include/sbml/validator +@dirrm include/sbml/xml +@dirrm include/sbml/ |