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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2023-04-29 14:51:07 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2023-04-29 14:53:40 +0000 |
| commit | 57d280a35eb7d931d7009182b8dd2289c946f391 (patch) | |
| tree | 108adcf19cea66b22e38d7bda2fd695cd3f18ae9 /biology/minimap2 | |
| parent | 9356d832e6841144853ec5b2e2000d2abcb02347 (diff) | |
| download | ports-57d280a35eb7d931d7009182b8dd2289c946f391.tar.gz ports-57d280a35eb7d931d7009182b8dd2289c946f391.zip | |
biology/minimap2: Update to 2.25
New feature to output sequences in secondary alignments
Several minor enhancements and fixes
Changes: https://github.com/lh3/minimap2/releases
Reported by: portscout
Diffstat (limited to 'biology/minimap2')
| -rw-r--r-- | biology/minimap2/Makefile | 2 | ||||
| -rw-r--r-- | biology/minimap2/distinfo | 6 | ||||
| -rw-r--r-- | biology/minimap2/pkg-descr | 6 |
3 files changed, 4 insertions, 10 deletions
diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile index 83084fd86a16..ff6799f92d2a 100644 --- a/biology/minimap2/Makefile +++ b/biology/minimap2/Makefile @@ -1,6 +1,6 @@ PORTNAME= minimap2 DISTVERSIONPREFIX= v -DISTVERSION= 2.24 +DISTVERSION= 2.25 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/minimap2/distinfo b/biology/minimap2/distinfo index 65cf355b10a5..7c79ce9501e2 100644 --- a/biology/minimap2/distinfo +++ b/biology/minimap2/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1640960772 -SHA256 (lh3-minimap2-v2.24_GH0.tar.gz) = 2e3264300661cf1fce6adabffe6970ec59d46f3e8150dd40fa4501ff4f6c0dbc -SIZE (lh3-minimap2-v2.24_GH0.tar.gz) = 253050 +TIMESTAMP = 1682729894 +SHA256 (lh3-minimap2-v2.25_GH0.tar.gz) = 9742ff0be01e51ea7d65f70c01d1344eee6f0d7b135359e0c00aec30fb74ac38 +SIZE (lh3-minimap2-v2.25_GH0.tar.gz) = 257574 diff --git a/biology/minimap2/pkg-descr b/biology/minimap2/pkg-descr index e4e8dbd749d9..d0a8f4d1b41d 100644 --- a/biology/minimap2/pkg-descr +++ b/biology/minimap2/pkg-descr @@ -1,16 +1,10 @@ Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: - (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome - (2) finding overlaps between long reads with error rate up to ~15% - (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA readsagainst a reference genome - (4) aligning Illumina single- or paired-end reads - (5) assembly-to-assembly alignment - (6) full-genome alignment between two closely related species with divergence below ~15% |