diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2024-03-13 13:44:27 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2024-03-13 13:44:27 +0000 |
| commit | 59bdd5ade7461f7925af1ad1ae2f2a8cb90a848f (patch) | |
| tree | 9a7597871064cd3e597a1bf12dfdd40707c0aaa2 /biology/minimap2 | |
| parent | 5679830ab9c26912d8c86188e40db4301a5fa2bc (diff) | |
| download | ports-59bdd5ade7461f7925af1ad1ae2f2a8cb90a848f.tar.gz ports-59bdd5ade7461f7925af1ad1ae2f2a8cb90a848f.zip | |
biology/minimap2: Update to 2.27
Several new features and a few bug fixes
Changes: https://github.com/lh3/minimap2/releases
Reported by: portscout
Diffstat (limited to 'biology/minimap2')
| -rw-r--r-- | biology/minimap2/Makefile | 3 | ||||
| -rw-r--r-- | biology/minimap2/distinfo | 6 | ||||
| -rw-r--r-- | biology/minimap2/files/patch-Makefile.simde | 6 | ||||
| -rw-r--r-- | biology/minimap2/pkg-plist | 2 |
4 files changed, 8 insertions, 9 deletions
diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile index 2ab83948882d..d403413cc324 100644 --- a/biology/minimap2/Makefile +++ b/biology/minimap2/Makefile @@ -1,7 +1,6 @@ PORTNAME= minimap2 DISTVERSIONPREFIX= v -DISTVERSION= 2.25 -PORTREVISION= 1 +DISTVERSION= 2.27 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/minimap2/distinfo b/biology/minimap2/distinfo index 7c79ce9501e2..5a1bf73dfa7d 100644 --- a/biology/minimap2/distinfo +++ b/biology/minimap2/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1682729894 -SHA256 (lh3-minimap2-v2.25_GH0.tar.gz) = 9742ff0be01e51ea7d65f70c01d1344eee6f0d7b135359e0c00aec30fb74ac38 -SIZE (lh3-minimap2-v2.25_GH0.tar.gz) = 257574 +TIMESTAMP = 1710332275 +SHA256 (lh3-minimap2-v2.27_GH0.tar.gz) = ca9ceb07e3b388858ebc2d7d91a6c74e996659402d16aa759ecedd63588b1ef7 +SIZE (lh3-minimap2-v2.27_GH0.tar.gz) = 259736 diff --git a/biology/minimap2/files/patch-Makefile.simde b/biology/minimap2/files/patch-Makefile.simde index faef217fbdab..5d5e0ccf482c 100644 --- a/biology/minimap2/files/patch-Makefile.simde +++ b/biology/minimap2/files/patch-Makefile.simde @@ -1,4 +1,4 @@ ---- Makefile.simde.orig 2023-04-25 16:44:52 UTC +--- Makefile.simde.orig 2021-11-18 22:11:48 UTC +++ Makefile.simde @@ -1,13 +1,26 @@ -CFLAGS= -g -Wall -O2 -Wc++-compat #-Wextra @@ -21,7 +21,7 @@ LIBS= -lm -lz -lpthread +PREFIX?= /usr/local -+MAN1DIR?= ${PREFIX}/share/man/man1 ++MAN1DIR?= ${PREFIX}/man/man1 +DATADIR?= ${PREFIX}/share/minimap2 +MKDIR?= mkdir @@ -32,7 +32,7 @@ ifneq ($(arm_neon),) # if arm_neon is defined ifeq ($(aarch64),) #if aarch64 is not defined CFLAGS+=-D_FILE_OFFSET_BITS=64 -mfpu=neon -fsigned-char -@@ -26,7 +39,7 @@ endif +@@ -26,7 +39,7 @@ ifneq ($(tsan),) LIBS+=-fsanitize=thread endif diff --git a/biology/minimap2/pkg-plist b/biology/minimap2/pkg-plist index 742d1eb1b3f7..1d11d4c99c2f 100644 --- a/biology/minimap2/pkg-plist +++ b/biology/minimap2/pkg-plist @@ -1,7 +1,7 @@ bin/minimap2 bin/minimap2-lite bin/sdust -share/man/man1/minimap2.1.gz +man/man1/minimap2.1.gz %%DATADIR%%/test/MT-human.fa %%DATADIR%%/test/MT-orang.fa %%DATADIR%%/test/q-inv.fa |