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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-04-11 19:16:28 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-04-11 19:18:02 +0000 |
| commit | a2fa05009fd280fcf8e93f1062b554fdcca63c9a (patch) | |
| tree | cb3fb4db2678413be7a901d6a1434801f1ce1999 /biology/minimap2 | |
| parent | 77cfb4c1e4c680ce68507660138300a82a8930dd (diff) | |
| download | ports-a2fa05009fd280fcf8e93f1062b554fdcca63c9a.tar.gz ports-a2fa05009fd280fcf8e93f1062b554fdcca63c9a.zip | |
biology/minimap2: Update to 2.18
Numerous bug fixes and a few minor improvements
Reported by: portscout
Diffstat (limited to 'biology/minimap2')
| -rw-r--r-- | biology/minimap2/Makefile | 2 | ||||
| -rw-r--r-- | biology/minimap2/distinfo | 6 | ||||
| -rw-r--r-- | biology/minimap2/files/patch-Makefile | 8 |
3 files changed, 7 insertions, 9 deletions
diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile index e8570bd99479..d99da2bcc4b5 100644 --- a/biology/minimap2/Makefile +++ b/biology/minimap2/Makefile @@ -1,6 +1,6 @@ PORTNAME= minimap2 DISTVERSIONPREFIX= v -DISTVERSION= 2.17 +DISTVERSION= 2.18 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/minimap2/distinfo b/biology/minimap2/distinfo index aa8229da44d3..69632d44a87f 100644 --- a/biology/minimap2/distinfo +++ b/biology/minimap2/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1557067380 -SHA256 (lh3-minimap2-v2.17_GH0.tar.gz) = 0a3eaa3ef3d9f9e41f48199cc4aac0508366ac644fc3e8fe05e3463acd23d20b -SIZE (lh3-minimap2-v2.17_GH0.tar.gz) = 224006 +TIMESTAMP = 1618167822 +SHA256 (lh3-minimap2-v2.18_GH0.tar.gz) = efe75148342decd67e16f6a9ae14918ab9e1d67cadcfab5698b847f5b66f55e3 +SIZE (lh3-minimap2-v2.18_GH0.tar.gz) = 231187 diff --git a/biology/minimap2/files/patch-Makefile b/biology/minimap2/files/patch-Makefile index f9008ea92a76..19bf99b1325d 100644 --- a/biology/minimap2/files/patch-Makefile +++ b/biology/minimap2/files/patch-Makefile @@ -1,10 +1,8 @@ ---- Makefile.orig 2019-05-05 03:49:17 UTC +--- Makefile.orig 2019-02-28 20:49:24 UTC +++ Makefile -@@ -1,11 +1,21 @@ +@@ -1,11 +1,19 @@ -CFLAGS= -g -Wall -O2 -Wc++-compat #-Wextra -CPPFLAGS= -DHAVE_KALLOC -+# Patches using ?= and adding install target were rejected by developers -+# https://github.com/lh3/minimap2/issues/388 +CFLAGS?= -g -Wall -O2 +CFLAGS+= -Wc++-compat #-Wextra +CPPFLAGS+= -DHAVE_KALLOC @@ -24,7 +22,7 @@ ifeq ($(arm_neon),) # if arm_neon is not defined ifeq ($(sse2only),) # if sse2only is not defined OBJS+=ksw2_extz2_sse41.o ksw2_extd2_sse41.o ksw2_exts2_sse41.o ksw2_extz2_sse2.o ksw2_extd2_sse2.o ksw2_exts2_sse2.o ksw2_dispatch.o -@@ -84,6 +94,15 @@ ksw2_exts2_neon.o:ksw2_exts2_sse.c ksw2.h kalloc.h +@@ -84,6 +92,15 @@ ksw2_exts2_neon.o:ksw2_exts2_sse.c ksw2.h kalloc.h $(CC) -c $(CFLAGS) $(CPPFLAGS) -DKSW_SSE2_ONLY -D__SSE2__ $(INCLUDES) $< -o $@ # other non-file targets |