diff options
| author | Yuri Victorovich <yuri@FreeBSD.org> | 2019-05-20 17:59:17 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2019-05-20 17:59:17 +0000 |
| commit | 9114406e04d6d70e57e937c313e148a6a96402e0 (patch) | |
| tree | 2079335a18b6704fbb127c78bf59639eec6e8ea1 /biology/mothur | |
| parent | 3d065532be04df79de1842076fd98bc87f545019 (diff) | |
| download | ports-9114406e04d6d70e57e937c313e148a6a96402e0.tar.gz ports-9114406e04d6d70e57e937c313e148a6a96402e0.zip | |
New port: biology/mothur: Software for bioinformatics of the microbial ecology community
Notes
Notes:
svn path=/head/; revision=502128
Diffstat (limited to 'biology/mothur')
| -rw-r--r-- | biology/mothur/Makefile | 33 | ||||
| -rw-r--r-- | biology/mothur/distinfo | 3 | ||||
| -rw-r--r-- | biology/mothur/pkg-descr | 4 |
3 files changed, 40 insertions, 0 deletions
diff --git a/biology/mothur/Makefile b/biology/mothur/Makefile new file mode 100644 index 000000000000..2ed39a98964d --- /dev/null +++ b/biology/mothur/Makefile @@ -0,0 +1,33 @@ +# $FreeBSD$ + +PORTNAME= mothur +DISTVERSIONPREFIX= v +DISTVERSION= 1.42.1-3 +DISTVERSIONSUFFIX= -gb670137a +CATEGORIES= biology + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Software for bioinformatics of the microbial ecology community + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/LICENSE.md + +BUILD_DEPENDS= bash:shells/bash + +USES= gmake localbase readline shebangfix +SHEBANG_FILES= source/uchime_src/mk +USE_GITHUB= yes +ALL_TARGET= ${PORTNAME} + +BINARY_ALIAS= g++=${CXX} + +EXES= ${PORTNAME} uchime + +PLIST_FILES= ${EXES:S/^/bin\//} + +do-install: # https://github.com/mothur/mothur/issues/615 +.for e in ${EXES} + ${INSTALL_PROGRAM} ${WRKSRC}/${e} ${STAGEDIR}${PREFIX}/bin +.endfor + +.include <bsd.port.mk> diff --git a/biology/mothur/distinfo b/biology/mothur/distinfo new file mode 100644 index 000000000000..3033b9d13e29 --- /dev/null +++ b/biology/mothur/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1558374468 +SHA256 (mothur-mothur-v1.42.1-3-gb670137a_GH0.tar.gz) = fe7742102af4eb62fef75357b3a2563283e70f8ec344898f7c4396ff41309bf1 +SIZE (mothur-mothur-v1.42.1-3-gb670137a_GH0.tar.gz) = 1651578 diff --git a/biology/mothur/pkg-descr b/biology/mothur/pkg-descr new file mode 100644 index 000000000000..ab9fc4156df2 --- /dev/null +++ b/biology/mothur/pkg-descr @@ -0,0 +1,4 @@ +This project seeks to develop a single piece of open-source, expandable software +to fill the bioinformatics needs of the microbial ecology community. + +WWW: https://www.mothur.org/ |