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authorNiclas Zeising <zeising@FreeBSD.org>2019-09-28 10:52:57 +0000
committerNiclas Zeising <zeising@FreeBSD.org>2019-09-28 10:52:57 +0000
commitdcb57b76438d6abc8037ba07c4937349a719372d (patch)
treec81220b2d18b1410a96bec1d2eb35fd35f410a5f /biology/ncbi-toolkit
parent4df5b7bc2d553c485dc8067a0b9421ca7817622f (diff)
downloadports-dcb57b76438d6abc8037ba07c4937349a719372d.tar.gz
ports-dcb57b76438d6abc8037ba07c4937349a719372d.zip
biologi/ncbi-toolkit: Remove dependency on libXp
Remove the dependency on libXp from ncbi-toolkit, since libXp is deprecated and it isn't needed. Remove deprecation from ncbi-toolkit.
Notes
Notes: svn path=/head/; revision=513114
Diffstat (limited to 'biology/ncbi-toolkit')
-rw-r--r--biology/ncbi-toolkit/Makefile9
1 files changed, 4 insertions, 5 deletions
diff --git a/biology/ncbi-toolkit/Makefile b/biology/ncbi-toolkit/Makefile
index 1b39210097cd..571d84ddd496 100644
--- a/biology/ncbi-toolkit/Makefile
+++ b/biology/ncbi-toolkit/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ncbi-toolkit
DISTVERSION= 2017.01.06 # containing BLAST v2.2.27 (? is this true)
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= biology
MASTER_SITES= ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
DISTNAME= ncbi
@@ -12,8 +12,6 @@ DIST_SUBDIR= ${PORTNAME}-${PORTVERSION}
MAINTAINER= yuri@FreeBSD.org
COMMENT= NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
-DEPRECATED= Depends on deprecated libXp
-
LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \
libgmp.so:math/gmp \
libgnutls.so:security/gnutls \
@@ -24,8 +22,7 @@ LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \
libpng.so:graphics/png \
libtasn1.so:security/libtasn1 \
libtspi.so:security/trousers \
- libunistring.so:devel/libunistring \
- libXp.so:x11/libXp
+ libunistring.so:devel/libunistring
USES= gettext-runtime iconv jpeg motif xorg
USE_XORG= x11 xau xext xft xmu xrender xt
@@ -41,6 +38,8 @@ post-patch:
'/^NCBI_CC/s|=.*|= ${CC}| ; \
/^NCBI_LDFLGS1/s|=.*|= ${LDFLAGS}| ; \
/^NCBI_OPTFLAG/s|= .*|= ${CFLAGS}| ; \
+ /^NCBI_VIBLIBS/s|-lXp\ || ; \
+ /^NCBI_DISTVIBLIBS/s|-lXp\ || ; \
s|-I/usr/X11R6/include||g ; \
s|-L/usr/X11R6/lib||g ; \
s|/usr/local|${LOCALBASE}|g ; \