diff options
| author | Yuri Victorovich <yuri@FreeBSD.org> | 2020-04-04 20:09:00 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2020-04-04 20:09:00 +0000 |
| commit | 1a6b2f5c2cea0b69b17150a677bda61c1911080e (patch) | |
| tree | 97444f2aa1644deffb170a0be3ce2ab08857c7a9 /biology/ngs-sdk | |
| parent | b994f92ad16e6372a4d6deebeb6246a3e03f4db4 (diff) | |
| download | ports-1a6b2f5c2cea0b69b17150a677bda61c1911080e.tar.gz ports-1a6b2f5c2cea0b69b17150a677bda61c1911080e.zip | |
biology/ngs-sdk: Update 2.10.4 -> 2.10.5
Reported by: portscout
Notes
Notes:
svn path=/head/; revision=530713
Diffstat (limited to 'biology/ngs-sdk')
| -rw-r--r-- | biology/ngs-sdk/Makefile | 2 | ||||
| -rw-r--r-- | biology/ngs-sdk/distinfo | 6 | ||||
| -rw-r--r-- | biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl | 14 | ||||
| -rw-r--r-- | biology/ngs-sdk/pkg-plist | 2 |
4 files changed, 12 insertions, 12 deletions
diff --git a/biology/ngs-sdk/Makefile b/biology/ngs-sdk/Makefile index 55bbe806fd49..accb479c0f18 100644 --- a/biology/ngs-sdk/Makefile +++ b/biology/ngs-sdk/Makefile @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= ngs -DISTVERSION= 2.10.4 +DISTVERSION= 2.10.5 CATEGORIES= biology PKGNAMESUFFIX= -sdk diff --git a/biology/ngs-sdk/distinfo b/biology/ngs-sdk/distinfo index 3a54e89f0a05..9e4c90de3180 100644 --- a/biology/ngs-sdk/distinfo +++ b/biology/ngs-sdk/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1583611036 -SHA256 (ncbi-ngs-2.10.4_GH0.tar.gz) = 6f5db2269c6afc8e51a50fbcab9c63f4b1d6b69e483c6acb40d8f9e52f8282b1 -SIZE (ncbi-ngs-2.10.4_GH0.tar.gz) = 1093978 +TIMESTAMP = 1586029714 +SHA256 (ncbi-ngs-2.10.5_GH0.tar.gz) = c39ee65a625e3646e0212c5d8be846e45d368c644a053d3b54cf63f53853f02f +SIZE (ncbi-ngs-2.10.5_GH0.tar.gz) = 1099528 diff --git a/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl b/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl index 43e27b26103b..5a199c8ad1dd 100644 --- a/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl +++ b/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl @@ -1,4 +1,4 @@ ---- ngs-sdk/setup/konfigure.perl.orig 2019-08-20 18:05:02 UTC +--- ngs-sdk/setup/konfigure.perl.orig 2020-04-01 16:34:36 UTC +++ ngs-sdk/setup/konfigure.perl @@ -202,7 +202,7 @@ print "checking system type... " unless ($AUTORUN); my ($OS, $ARCH, $OSTYPE, $MARCH, @ARCHITECTURES) = OsArch(); @@ -20,12 +20,11 @@ print "checking machine architecture... " unless ($AUTORUN); println $MARCH unless ($AUTORUN); unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) { -@@ -332,6 +336,16 @@ if ($OSTYPE =~ /linux/i) { - $EXEX = ''; +@@ -333,6 +337,16 @@ if ($OSTYPE =~ /linux/i) { $OSINC = 'unix'; $TOOLS = 'gcc' unless ($TOOLS); + $PYTHON = 'python'; +} elsif ($OSTYPE =~ /freebsd/i) { -+ $BITS = ''; + $LPFX = 'lib'; + $OBJX = 'o'; + $LOBX = 'pic.o'; @@ -34,10 +33,11 @@ + $EXEX = ''; + $OSINC = 'unix'; + $TOOLS = 'clang' unless ($TOOLS); ++ $PYTHON = 'python'; } elsif ($OSTYPE =~ /darwin/i) { $LPFX = 'lib'; $OBJX = 'o'; -@@ -377,11 +391,11 @@ if ($TOOLS =~ /gcc$/) { +@@ -379,11 +393,11 @@ if ($TOOLS =~ /gcc$/) { } elsif ($TOOLS eq 'clang') { $CPP = 'clang++' unless ($CPP); $CC = 'clang -c'; @@ -51,7 +51,7 @@ $AR = 'ar rc'; $LD = "clang $ARCH_FL"; $LP = "$CPP $versionMin $ARCH_FL"; -@@ -478,7 +492,7 @@ foreach my $href (DEPENDS()) { +@@ -508,7 +522,7 @@ foreach my $href (DEPENDS()) { $I = $t if (-e $t); } push ( @L, File::Spec->catdir($OPT{$o}, 'lib') ); @@ -60,7 +60,7 @@ } my ($i, $l) = find_lib($_, $I, @L); if (defined $i || $l) { -@@ -898,8 +912,7 @@ EndText +@@ -929,8 +943,7 @@ EndText L($F, "PIC = $PIC") if ($PIC); if ($PKG{LNG} eq 'C') { if ($TOOLS =~ /clang/i) { diff --git a/biology/ngs-sdk/pkg-plist b/biology/ngs-sdk/pkg-plist index 9852a3dc5f47..627134b0167a 100644 --- a/biology/ngs-sdk/pkg-plist +++ b/biology/ngs-sdk/pkg-plist @@ -92,4 +92,4 @@ lib/libngs-adapt-c++.a lib/libngs-c++.a lib/libngs-sdk.so lib/libngs-sdk.so.2 -lib/libngs-sdk.so.2.10.4 +lib/libngs-sdk.so.2.10.5 |