diff options
| author | Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> | 2019-12-08 16:49:19 +0000 |
|---|---|---|
| committer | Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> | 2019-12-08 16:49:19 +0000 |
| commit | 876817898e2d2754a455ba56057e45bd5bcd8923 (patch) | |
| tree | d033b7d65ff1f3d2a1167130e08e510059b305fd /biology/p5-Bio-DB-EMBL | |
| parent | 2715cc2812c0f189d049e8a0b521462c16cc2245 (diff) | |
| download | ports-876817898e2d2754a455ba56057e45bd5bcd8923.tar.gz ports-876817898e2d2754a455ba56057e45bd5bcd8923.zip | |
Add p5-Bio-DB-EMBL 1.7.4
Bio::DB::EMBL allows the dynamic retrieval of sequence objects Bio::Seq from the
EMBL database using the dbfetch script at EBI.
In order to make changes transparent we have host type (currently only ebi) and
location (defaults to ebi) separated out. This allows later additions of more
servers in different geographical locations.
The functionality of this module is inherited from Bio::DB::DBFetch which
implements Bio::DB::WebDBSeqI.
WWW: https://metacpan.org/release/Bio-DB-EMBL
Notes
Notes:
svn path=/head/; revision=519318
Diffstat (limited to 'biology/p5-Bio-DB-EMBL')
| -rw-r--r-- | biology/p5-Bio-DB-EMBL/Makefile | 27 | ||||
| -rw-r--r-- | biology/p5-Bio-DB-EMBL/distinfo | 3 | ||||
| -rw-r--r-- | biology/p5-Bio-DB-EMBL/pkg-descr | 11 | ||||
| -rw-r--r-- | biology/p5-Bio-DB-EMBL/pkg-plist | 2 |
4 files changed, 43 insertions, 0 deletions
diff --git a/biology/p5-Bio-DB-EMBL/Makefile b/biology/p5-Bio-DB-EMBL/Makefile new file mode 100644 index 000000000000..7df8955f969a --- /dev/null +++ b/biology/p5-Bio-DB-EMBL/Makefile @@ -0,0 +1,27 @@ +# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org> +# $FreeBSD$ + +PORTNAME= Bio-DB-EMBL +PORTVERSION= 1.7.4 +CATEGORIES= biology perl5 +MASTER_SITES= CPAN +PKGNAMEPREFIX= p5- + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= Database object interface for EMBL entry retrieval + +LICENSE= ART10 GPLv1+ +LICENSE_COMB= dual +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= ${RUN_DEPENDS} +RUN_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl +TEST_DEPENDS= p5-Test-Most>=0:devel/p5-Test-Most \ + p5-Test-RequiresInternet>=0:devel/p5-Test-RequiresInternet + +USES= perl5 +USE_PERL5= configure + +NO_ARCH= yes + +.include <bsd.port.mk> diff --git a/biology/p5-Bio-DB-EMBL/distinfo b/biology/p5-Bio-DB-EMBL/distinfo new file mode 100644 index 000000000000..137a201d77f7 --- /dev/null +++ b/biology/p5-Bio-DB-EMBL/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1575793783 +SHA256 (Bio-DB-EMBL-1.7.4.tar.gz) = fce080c4b3db7bcc529fd0cf0d29700d0b86ef8bbe7f77ad87f429a3ae7e1a27 +SIZE (Bio-DB-EMBL-1.7.4.tar.gz) = 13927 diff --git a/biology/p5-Bio-DB-EMBL/pkg-descr b/biology/p5-Bio-DB-EMBL/pkg-descr new file mode 100644 index 000000000000..eabf5d8ec13f --- /dev/null +++ b/biology/p5-Bio-DB-EMBL/pkg-descr @@ -0,0 +1,11 @@ +Bio::DB::EMBL allows the dynamic retrieval of sequence objects Bio::Seq from the +EMBL database using the dbfetch script at EBI. + +In order to make changes transparent we have host type (currently only ebi) and +location (defaults to ebi) separated out. This allows later additions of more +servers in different geographical locations. + +The functionality of this module is inherited from Bio::DB::DBFetch which +implements Bio::DB::WebDBSeqI. + +WWW: https://metacpan.org/release/Bio-DB-EMBL diff --git a/biology/p5-Bio-DB-EMBL/pkg-plist b/biology/p5-Bio-DB-EMBL/pkg-plist new file mode 100644 index 000000000000..0fabd12f505f --- /dev/null +++ b/biology/p5-Bio-DB-EMBL/pkg-plist @@ -0,0 +1,2 @@ +%%SITE_PERL%%/Bio/DB/EMBL.pm +%%PERL5_MAN3%%/Bio::DB::EMBL.3.gz |