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| author | Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> | 2019-12-08 16:49:31 +0000 |
|---|---|---|
| committer | Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> | 2019-12-08 16:49:31 +0000 |
| commit | 1f75530f6c8a192d97901606b9c9e3e6e0d11d52 (patch) | |
| tree | 8ae89396cacf989d28b8e7bd6e6cf04ec4b04028 /biology/p5-Bio-Variation | |
| parent | 2b9ee80386f47865aff9fbafeaeccd8c81e8c4ad (diff) | |
| download | ports-1f75530f6c8a192d97901606b9c9e3e6e0d11d52.tar.gz ports-1f75530f6c8a192d97901606b9c9e3e6e0d11d52.zip | |
Add p5-Bio-Variation 1.7.4
Bio::Variation::* provides BioPerl variation-related functionality.
WWW: https://metacpan.org/release/Bio-Variation
Notes
Notes:
svn path=/head/; revision=519320
Diffstat (limited to 'biology/p5-Bio-Variation')
| -rw-r--r-- | biology/p5-Bio-Variation/Makefile | 30 | ||||
| -rw-r--r-- | biology/p5-Bio-Variation/distinfo | 3 | ||||
| -rw-r--r-- | biology/p5-Bio-Variation/pkg-descr | 3 | ||||
| -rw-r--r-- | biology/p5-Bio-Variation/pkg-plist | 27 |
4 files changed, 63 insertions, 0 deletions
diff --git a/biology/p5-Bio-Variation/Makefile b/biology/p5-Bio-Variation/Makefile new file mode 100644 index 000000000000..3153678f048d --- /dev/null +++ b/biology/p5-Bio-Variation/Makefile @@ -0,0 +1,30 @@ +# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org> +# $FreeBSD$ + +PORTNAME= Bio-Variation +PORTVERSION= 1.7.4 +CATEGORIES= biology perl5 +MASTER_SITES= CPAN +PKGNAMEPREFIX= p5- + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= BioPerl variation-related functionality + +LICENSE= ART10 GPLv1+ +LICENSE_COMB= dual +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= ${RUN_DEPENDS} +RUN_DEPENDS= p5-Bio-DB-EMBL>=0:biology/p5-Bio-DB-EMBL \ + p5-Bio-DB-NCBIHelper>=0:biology/p5-Bio-DB-NCBIHelper \ + p5-BioPerl>=0:biology/p5-BioPerl \ + p5-IO-String>=0:devel/p5-IO-String \ + p5-XML-Twig>=0:textproc/p5-XML-Twig \ + p5-XML-Writer>=0.400:textproc/p5-XML-Writer + +USES= perl5 +USE_PERL5= configure + +NO_ARCH= yes + +.include <bsd.port.mk> diff --git a/biology/p5-Bio-Variation/distinfo b/biology/p5-Bio-Variation/distinfo new file mode 100644 index 000000000000..63fc33fccc3d --- /dev/null +++ b/biology/p5-Bio-Variation/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1575793787 +SHA256 (Bio-Variation-1.7.4.tar.gz) = b5dc609c5bbd39937cdce0e5cbf299a2e2cf30c235fe6f71c904ae7dc1697b56 +SIZE (Bio-Variation-1.7.4.tar.gz) = 60449 diff --git a/biology/p5-Bio-Variation/pkg-descr b/biology/p5-Bio-Variation/pkg-descr new file mode 100644 index 000000000000..29d4524c634e --- /dev/null +++ b/biology/p5-Bio-Variation/pkg-descr @@ -0,0 +1,3 @@ +Bio::Variation::* provides BioPerl variation-related functionality. + +WWW: https://metacpan.org/release/Bio-Variation diff --git a/biology/p5-Bio-Variation/pkg-plist b/biology/p5-Bio-Variation/pkg-plist new file mode 100644 index 000000000000..ab0d6f50e248 --- /dev/null +++ b/biology/p5-Bio-Variation/pkg-plist @@ -0,0 +1,27 @@ +bin/bp_flanks +%%SITE_PERL%%/Bio/Variation.pm +%%SITE_PERL%%/Bio/Variation/AAChange.pm +%%SITE_PERL%%/Bio/Variation/AAReverseMutate.pm +%%SITE_PERL%%/Bio/Variation/Allele.pm +%%SITE_PERL%%/Bio/Variation/DNAMutation.pm +%%SITE_PERL%%/Bio/Variation/IO.pm +%%SITE_PERL%%/Bio/Variation/IO/flat.pm +%%SITE_PERL%%/Bio/Variation/IO/xml.pm +%%SITE_PERL%%/Bio/Variation/README +%%SITE_PERL%%/Bio/Variation/RNAChange.pm +%%SITE_PERL%%/Bio/Variation/SNP.pm +%%SITE_PERL%%/Bio/Variation/SeqDiff.pm +%%SITE_PERL%%/Bio/Variation/VariantI.pm +%%PERL5_MAN1%%/bp_flanks.1.gz +%%PERL5_MAN3%%/Bio::Variation.3.gz +%%PERL5_MAN3%%/Bio::Variation::AAChange.3.gz +%%PERL5_MAN3%%/Bio::Variation::AAReverseMutate.3.gz +%%PERL5_MAN3%%/Bio::Variation::Allele.3.gz +%%PERL5_MAN3%%/Bio::Variation::DNAMutation.3.gz +%%PERL5_MAN3%%/Bio::Variation::IO.3.gz +%%PERL5_MAN3%%/Bio::Variation::IO::flat.3.gz +%%PERL5_MAN3%%/Bio::Variation::IO::xml.3.gz +%%PERL5_MAN3%%/Bio::Variation::RNAChange.3.gz +%%PERL5_MAN3%%/Bio::Variation::SNP.3.gz +%%PERL5_MAN3%%/Bio::Variation::SeqDiff.3.gz +%%PERL5_MAN3%%/Bio::Variation::VariantI.3.gz |