diff options
| author | Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> | 2019-09-07 22:44:02 +0000 |
|---|---|---|
| committer | Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> | 2019-09-07 22:44:02 +0000 |
| commit | 20b6ec5afb6aab3fc71f86602b08cb0f96d3aaf4 (patch) | |
| tree | 11552999a621685ceb26213ae14fc1d809085066 /biology/p5-BioPerl | |
| parent | c7d05bb11e66ecef89a17761bebf6672f290ebae (diff) | |
| download | ports-20b6ec5afb6aab3fc71f86602b08cb0f96d3aaf4.tar.gz ports-20b6ec5afb6aab3fc71f86602b08cb0f96d3aaf4.zip | |
Update to 1.007006 (1.7.6)
- Remove PGTEST and SQLITETEST options: DBD::Pg and DBD::SQLite have been removed from BioPerl by upstream for the move of modules and programs into separate distributions
Changes: https://metacpan.org/changes/distribution/BioPerl
Notes
Notes:
svn path=/head/; revision=511437
Diffstat (limited to 'biology/p5-BioPerl')
| -rw-r--r-- | biology/p5-BioPerl/Makefile | 18 | ||||
| -rw-r--r-- | biology/p5-BioPerl/distinfo | 6 | ||||
| -rw-r--r-- | biology/p5-BioPerl/pkg-plist | 3 |
3 files changed, 8 insertions, 19 deletions
diff --git a/biology/p5-BioPerl/Makefile b/biology/p5-BioPerl/Makefile index 6147a19796cb..9166f42ced3b 100644 --- a/biology/p5-BioPerl/Makefile +++ b/biology/p5-BioPerl/Makefile @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= BioPerl -PORTVERSION= 1.007005 -PORTREVISION= 1 +PORTVERSION= 1.007006 CATEGORIES= biology perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:CDRAUG @@ -18,10 +17,8 @@ LICENSE_COMB= dual LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${RUN_DEPENDS} -RUN_DEPENDS= p5-DBI>=0:databases/p5-DBI \ - p5-Data-Stag>=0:devel/p5-Data-Stag \ +RUN_DEPENDS= p5-Data-Stag>=0:devel/p5-Data-Stag \ p5-Error>=0:lang/p5-Error \ - p5-GD>=0:graphics/p5-GD \ p5-Graph>=0:math/p5-Graph \ p5-HTTP-Message>=0:www/p5-HTTP-Message \ p5-IO-String>=0:devel/p5-IO-String \ @@ -52,16 +49,9 @@ USE_PERL5= configure NO_ARCH= yes -OPTIONS_DEFINE= DOCS EXAMPLES PGTEST SQLITETEST -PGTEST_DESC= Test PostGreSQL -SQLITETEST_DESC=Test SQLite +OPTIONS_DEFINE= DOCS EXAMPLES -PGTEST_RUN_DEPENDS= p5-DBD-Pg>=3:databases/p5-DBD-Pg -PGTEST_BUILD_DEPENDS= p5-DBD-Pg>=3:databases/p5-DBD-Pg -SQLITETEST_RUN_DEPENDS= p5-DBD-SQLite>=1:databases/p5-DBD-SQLite -SQLITETEST_BUILD_DEPENDS= p5-DBD-SQLite>=1:databases/p5-DBD-SQLite - -SHEBANG_FILES= examples/*.pl examples/*/*.pl +SHEBANG_GLOB= *.pl post-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} diff --git a/biology/p5-BioPerl/distinfo b/biology/p5-BioPerl/distinfo index a7180cfa9733..79a3ea039320 100644 --- a/biology/p5-BioPerl/distinfo +++ b/biology/p5-BioPerl/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1565523237 -SHA256 (BioPerl-1.7.5.tar.gz) = 4a96472004e35e11eafd1fa3b3966f1d18622de3afde3e2fa6765a2dbedb3a0a -SIZE (BioPerl-1.7.5.tar.gz) = 7512326 +TIMESTAMP = 1567842458 +SHA256 (BioPerl-1.7.6.tar.gz) = df2a3efc991b9b5d7cc9d038a1452c6dac910c9ad2a0e47e408dd692c111688d +SIZE (BioPerl-1.7.6.tar.gz) = 7514084 diff --git a/biology/p5-BioPerl/pkg-plist b/biology/p5-BioPerl/pkg-plist index 244f0c123a1d..6a2f6dc5ae16 100644 --- a/biology/p5-BioPerl/pkg-plist +++ b/biology/p5-BioPerl/pkg-plist @@ -2,7 +2,6 @@ bin/bp_aacomp bin/bp_bioflat_index bin/bp_biogetseq bin/bp_chaos_plot -bin/bp_classify_hits_kingdom bin/bp_dbsplit bin/bp_extract_feature_seq bin/bp_fastam9_to_table @@ -516,7 +515,6 @@ bin/bp_unflatten_seq %%PERL5_MAN1%%/bp_bioflat_index.1.gz %%PERL5_MAN1%%/bp_biogetseq.1.gz %%PERL5_MAN1%%/bp_chaos_plot.1.gz -%%PERL5_MAN1%%/bp_classify_hits_kingdom.1.gz %%PERL5_MAN1%%/bp_dbsplit.1.gz %%PERL5_MAN1%%/bp_extract_feature_seq.1.gz %%PERL5_MAN1%%/bp_fastam9_to_table.1.gz @@ -1035,6 +1033,7 @@ bin/bp_unflatten_seq %%PORTEXAMPLES%%%%EXAMPLESDIR%%/align/align_on_codons.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/align/aligntutorial.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/align/simplealign.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/classify_hits_kingdom %%PORTEXAMPLES%%%%EXAMPLESDIR%%/contributed/nmrpdb_parse.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/contributed/prosite2perl.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/contributed/rebase2list.pl |