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| author | Christian Weisgerber <naddy@FreeBSD.org> | 2003-02-14 23:21:23 +0000 |
|---|---|---|
| committer | Christian Weisgerber <naddy@FreeBSD.org> | 2003-02-14 23:21:23 +0000 |
| commit | 5eb743da03f689719de8e5c5a65ada23b71766fc (patch) | |
| tree | 8adafae032439087a6fb0be377d390903f6c5512 /biology/paml | |
| parent | 79ca4208ae8ae38b4061ba66121a7819c3e74cbb (diff) | |
| download | ports-5eb743da03f689719de8e5c5a65ada23b71766fc.tar.gz ports-5eb743da03f689719de8e5c5a65ada23b71766fc.zip | |
* Update to 3.13.
PR: 48255
Submitted by: David A. Bader <dbader@eece.unm.edu>
* Also honor CC/CFLAGS.
Notes
Notes:
svn path=/head/; revision=75540
Diffstat (limited to 'biology/paml')
| -rw-r--r-- | biology/paml/Makefile | 10 | ||||
| -rw-r--r-- | biology/paml/distinfo | 2 | ||||
| -rw-r--r-- | biology/paml/files/patch-src::Makefile | 12 | ||||
| -rw-r--r-- | biology/paml/pkg-comment | 1 | ||||
| -rw-r--r-- | biology/paml/pkg-plist | 2 |
5 files changed, 7 insertions, 20 deletions
diff --git a/biology/paml/Makefile b/biology/paml/Makefile index 93d99e80f866..3a742742eaf8 100644 --- a/biology/paml/Makefile +++ b/biology/paml/Makefile @@ -6,18 +6,18 @@ # PORTNAME= paml -PORTVERSION= 3.1 +PORTVERSION= 3.13 CATEGORIES= biology MASTER_SITES= ftp://abacus.gene.ucl.ac.uk/pub/paml/ -DISTNAME= paml3.1 -EXTRACT_SUFX= .tar.Z +DISTNAME= ${PORTNAME}${PORTVERSION} MAINTAINER= dbader@eece.unm.edu +COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) WRKSRC= ${WRKDIR}/${DISTNAME}/src +MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" -BINARIES= baseml basemlg chi2 codeml codemlsites evolver mcmctree \ - pamp yn00 +BINARIES= baseml basemlg chi2 codeml evolver mcmctree pamp yn00 do-install: .for f in ${BINARIES} diff --git a/biology/paml/distinfo b/biology/paml/distinfo index 1edfbcf51c88..acb906e15c1f 100644 --- a/biology/paml/distinfo +++ b/biology/paml/distinfo @@ -1 +1 @@ -MD5 (paml3.1.tar.Z) = dbf2b5a61a373518e5d27b837aec9df7 +MD5 (paml3.13.tar.gz) = a08ebd57332c9fe605439bf0025817bd diff --git a/biology/paml/files/patch-src::Makefile b/biology/paml/files/patch-src::Makefile deleted file mode 100644 index 9c24749fda4b..000000000000 --- a/biology/paml/files/patch-src::Makefile +++ /dev/null @@ -1,12 +0,0 @@ ---- Makefile.orig Thu Jul 19 12:01:33 2001 -+++ Makefile Tue Aug 28 19:07:55 2001 -@@ -1,7 +1,7 @@ - PRGS = baseml codeml codemlsites basemlg pamp evolver mcmctree yn00 chi2 --CC = cc # cc, gcc, cl -+CC = gcc # cc, gcc, cl - --CFLAGS = -fast -w -+CFLAGS = -O2 - - #CFLAGS = -w0 -warnprotos -newc -std -fast - #CFLAGS = -g -w0 -warnprotos -newc -std -edit1 # diff --git a/biology/paml/pkg-comment b/biology/paml/pkg-comment deleted file mode 100644 index 28176e9a1ed1..000000000000 --- a/biology/paml/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Phylogenetic Analysis by Maximum Likelihood (PAML) diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist index 17ee1e6cd87c..752da1f20a6d 100644 --- a/biology/paml/pkg-plist +++ b/biology/paml/pkg-plist @@ -1,8 +1,8 @@ +@comment $FreeBSD$ bin/baseml bin/basemlg bin/chi2 bin/codeml -bin/codemlsites bin/evolver bin/mcmctree bin/pamp |