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authorJoseph Mingrone <jrm@FreeBSD.org>2020-09-25 01:03:03 +0000
committerJoseph Mingrone <jrm@FreeBSD.org>2020-09-25 01:03:03 +0000
commitfd1ca09f9fd840c99ef14ec7a54c530791654597 (patch)
tree03441a0dac64a8f7b22e225e4253225810011711 /biology/py-biom-format
parentcdc8b9abdb9bace978fe7b404fa8d9af31171af6 (diff)
downloadports-fd1ca09f9fd840c99ef14ec7a54c530791654597.tar.gz
ports-fd1ca09f9fd840c99ef14ec7a54c530791654597.zip
biology/py-biom-format: Update to version 2.1.8
Notes
Notes: svn path=/head/; revision=549977
Diffstat (limited to 'biology/py-biom-format')
-rw-r--r--biology/py-biom-format/Makefile16
-rw-r--r--biology/py-biom-format/distinfo6
2 files changed, 7 insertions, 15 deletions
diff --git a/biology/py-biom-format/Makefile b/biology/py-biom-format/Makefile
index d81fb8a2b85a..ee2fb97760f3 100644
--- a/biology/py-biom-format/Makefile
+++ b/biology/py-biom-format/Makefile
@@ -1,8 +1,7 @@
# $FreeBSD$
PORTNAME= biom-format
-PORTVERSION= 2.1.7
-PORTREVISION= 3
+PORTVERSION= 2.1.8
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@@ -12,27 +11,20 @@ COMMENT= Biological Observation Matrix (BIOM) Format Project
LICENSE= BSD3CLAUSE
-DEPRECATED= Uses deprecated version of python
-EXPIRATION_DATE= 2020-08-15
-
BUILD_DEPENDS= ${PYNUMPY}
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \
${PYNUMPY} \
${PYTHON_PKGNAMEPREFIX}future>=0.16.0:devel/py-future@${PY_FLAVOR} \
- ${PYTHON_PKGNAMEPREFIX}scipy>=0.13.0:science/py-scipy@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}scipy>=1.3.1:science/py-scipy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pandas>=0.20.0:math/py-pandas@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}h5py>=2.2.0:science/py-h5py@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}six>=1.10.0:devel/py-six@${PY_FLAVOR}
-USES= python:-3.6
-USE_PYTHON= autoplist concurrent distutils
+USES= python:3.6+
+USE_PYTHON= autoplist concurrent cython distutils
.include <bsd.port.pre.mk>
-.if ${PYTHON_REL} < 3000
-RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pyqi>0:devel/py-pyqi@${PY_FLAVOR}
-.endif
-
post-extract:
${RM} -r ${WRKSRC}/tests
diff --git a/biology/py-biom-format/distinfo b/biology/py-biom-format/distinfo
index b705caff7e40..3fc90c54e976 100644
--- a/biology/py-biom-format/distinfo
+++ b/biology/py-biom-format/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1538769748
-SHA256 (biom-format-2.1.7.tar.gz) = b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4
-SIZE (biom-format-2.1.7.tar.gz) = 11820666
+TIMESTAMP = 1579317018
+SHA256 (biom-format-2.1.8.tar.gz) = 4d8813f84f7a79ee8c367e6ef57e154a121198b3979b81c74e6514668b756827
+SIZE (biom-format-2.1.8.tar.gz) = 12206773