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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2018-10-19 02:06:53 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2018-10-19 02:06:53 +0000 |
| commit | 4daaa701d3b3232df135b7033b0b625a0c3f3697 (patch) | |
| tree | 88dddf4df0c6cc5db74da3e6b7fa3047a14e472d /biology/py-gffutils | |
| parent | ac2652a87788097f19838182299cfe498b1a1d0f (diff) | |
| download | ports-4daaa701d3b3232df135b7033b0b625a0c3f3697.tar.gz ports-4daaa701d3b3232df135b7033b0b625a0c3f3697.zip | |
New port: biology/py-gffutils: Work with GFF and GTF files in a flexible database framework
Notes
Notes:
svn path=/head/; revision=482400
Diffstat (limited to 'biology/py-gffutils')
| -rw-r--r-- | biology/py-gffutils/Makefile | 25 | ||||
| -rw-r--r-- | biology/py-gffutils/distinfo | 3 | ||||
| -rw-r--r-- | biology/py-gffutils/pkg-descr | 7 |
3 files changed, 35 insertions, 0 deletions
diff --git a/biology/py-gffutils/Makefile b/biology/py-gffutils/Makefile new file mode 100644 index 000000000000..4cd1202fefe7 --- /dev/null +++ b/biology/py-gffutils/Makefile @@ -0,0 +1,25 @@ +# $FreeBSD$ + +PORTNAME= gffutils +DISTVERSION= 0.9 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Work with GFF and GTF files in a flexible database framework + +LICENSE= MIT + +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}argcomplete>0:devel/py-argcomplete@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}argh>0:devel/py-argh@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pyfaidx>0:biology/py-pyfaidx@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}simplejson>0:devel/py-simplejson@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} + +USES= python +USE_PYTHON= distutils concurrent autoplist + +NO_ARCH= yes + +.include <bsd.port.mk> diff --git a/biology/py-gffutils/distinfo b/biology/py-gffutils/distinfo new file mode 100644 index 000000000000..c6d2c3d2ee23 --- /dev/null +++ b/biology/py-gffutils/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1539913631 +SHA256 (gffutils-0.9.tar.gz) = e1b0bf2b422ec3491be13d77bf7baf71d274abd844e8f8b6c1217a95b236218b +SIZE (gffutils-0.9.tar.gz) = 1537395 diff --git a/biology/py-gffutils/pkg-descr b/biology/py-gffutils/pkg-descr new file mode 100644 index 000000000000..84768b7458ac --- /dev/null +++ b/biology/py-gffutils/pkg-descr @@ -0,0 +1,7 @@ +gffutils is a Python package for working with and manipulating the GFF and GTF +format files typically used for genomic annotations. Files are loaded into a +sqlite3 database, allowing much more complex manipulation of hierarchical +features (e.g., genes, transcripts, and exons) than is possible with plain-text +methods alone. + +WWW: https://github.com/daler/gffutils |