diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2019-05-10 21:04:43 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2019-05-10 21:04:43 +0000 |
| commit | 047a903a15dd3c02ebcda13abd0e5869639bd8b9 (patch) | |
| tree | 001b5ee77b69b2948f9e795c062ef410c8d28cf6 /biology/stacks | |
| parent | e115a388e60a65ab26fbbbab6e292eaa89936075 (diff) | |
| download | ports-047a903a15dd3c02ebcda13abd0e5869639bd8b9.tar.gz ports-047a903a15dd3c02ebcda13abd0e5869639bd8b9.zip | |
biology/stacks: Upgrade to 2.4
Improve check to avoid outdated GCC on 2nd tier platforms
Reported by: portscout
Notes
Notes:
svn path=/head/; revision=501199
Diffstat (limited to 'biology/stacks')
| -rw-r--r-- | biology/stacks/Makefile | 5 | ||||
| -rw-r--r-- | biology/stacks/distinfo | 6 | ||||
| -rw-r--r-- | biology/stacks/pkg-plist | 47 |
3 files changed, 6 insertions, 52 deletions
diff --git a/biology/stacks/Makefile b/biology/stacks/Makefile index d7e0d0938118..f2e69b114170 100644 --- a/biology/stacks/Makefile +++ b/biology/stacks/Makefile @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= stacks -DISTVERSION= 2.3 +DISTVERSION= 2.4 CATEGORIES= biology perl5 python MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/ @@ -21,7 +21,8 @@ LDFLAGS+= -lpthread .include <bsd.port.pre.mk> -.if ${ARCH} != amd64 && ${ARCH} != i386 +# Force newer GCC on platforms using GCC 4.2 as base +.if ${CHOSEN_COMPILER_TYPE} == gcc USE_GCC= yes .endif diff --git a/biology/stacks/distinfo b/biology/stacks/distinfo index d8c244d985e0..312ef425ec9d 100644 --- a/biology/stacks/distinfo +++ b/biology/stacks/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1547306940 -SHA256 (stacks-2.3.tar.gz) = 2a5befaf11ca2f191afcd42a3a3392290d6a116d7fe737b69a2c4d5b77f40c99 -SIZE (stacks-2.3.tar.gz) = 10962586 +TIMESTAMP = 1557519159 +SHA256 (stacks-2.4.tar.gz) = 30093d688a2dc62a19ea42a58065f024c8279419439049bcde186703e75641c1 +SIZE (stacks-2.4.tar.gz) = 10930616 diff --git a/biology/stacks/pkg-plist b/biology/stacks/pkg-plist index 6660e468dce5..605cf4a295db 100644 --- a/biology/stacks/pkg-plist +++ b/biology/stacks/pkg-plist @@ -16,50 +16,3 @@ bin/stacks-gdb bin/stacks-integrate-alignments bin/tsv2bam bin/ustacks -%%DATADIR%%/php/CatalogClass.php -%%DATADIR%%/php/Locus.php -%%DATADIR%%/php/ajax.js -%%DATADIR%%/php/annotate.js -%%DATADIR%%/php/annotate_marker.php -%%DATADIR%%/php/catalog.php -%%DATADIR%%/php/catalog_genotypes.php -%%DATADIR%%/php/constants.php.dist -%%DATADIR%%/php/correct_genotype.php -%%DATADIR%%/php/correct_genotypes.php -%%DATADIR%%/php/db_functions.php -%%DATADIR%%/php/export.js -%%DATADIR%%/php/export_batch.php -%%DATADIR%%/php/fst_view.php -%%DATADIR%%/php/hapstat_view.php -%%DATADIR%%/php/header.php -%%DATADIR%%/php/images/caret-d.png -%%DATADIR%%/php/images/caret-u.png -%%DATADIR%%/php/images/excel_icon.png -%%DATADIR%%/php/images/l-arrow-disabled.png -%%DATADIR%%/php/images/l-arrow.png -%%DATADIR%%/php/images/r-arrow-disabled.png -%%DATADIR%%/php/images/r-arrow.png -%%DATADIR%%/php/images/stacks_bg.png -%%DATADIR%%/php/images/stacks_logo_rev_small.png -%%DATADIR%%/php/index.php -%%DATADIR%%/php/last_modified.php -%%DATADIR%%/php/phist_view.php -%%DATADIR%%/php/pop_view.php -%%DATADIR%%/php/population_view.js -%%DATADIR%%/php/samples.php -%%DATADIR%%/php/sequence_blast.php -%%DATADIR%%/php/stack_view.php -%%DATADIR%%/php/stacks.css -%%DATADIR%%/php/stacks.js -%%DATADIR%%/php/stacks_functions.php -%%DATADIR%%/php/sumstat_view.php -%%DATADIR%%/php/tag.php -%%DATADIR%%/php/tags.php -%%DATADIR%%/php/version.php -%%DATADIR%%/php/view_sequence.php -%%DATADIR%%/sql/catalog_index.sql -%%DATADIR%%/sql/chr_index.sql -%%DATADIR%%/sql/mysql.cnf.dist -%%DATADIR%%/sql/stacks.sql -%%DATADIR%%/sql/tag_index.sql -@dir %%DATADIR%%/php/export |