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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-01-11 17:39:52 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-01-11 17:39:52 +0000 |
| commit | d139fe0bb654de274a2f45f702d907dd7a4fa404 (patch) | |
| tree | 7904424341dc41477a75643a6f9cc2ce31abfa4f /biology/star | |
| parent | bced63b1b352dff0bdfaab9926ceb2d942396587 (diff) | |
| download | ports-d139fe0bb654de274a2f45f702d907dd7a4fa404.tar.gz ports-d139fe0bb654de274a2f45f702d907dd7a4fa404.zip | |
biology/star: Drop dependency on gcc
Replace compiler:openmp with compiler:c++11-lang and localbase
PR: port/247753, ports/252379
Notes
Notes:
svn path=/head/; revision=561235
Diffstat (limited to 'biology/star')
| -rw-r--r-- | biology/star/Makefile | 12 | ||||
| -rw-r--r-- | biology/star/files/patch-Makefile | 18 |
2 files changed, 15 insertions, 15 deletions
diff --git a/biology/star/Makefile b/biology/star/Makefile index accd60435794..29d08668449e 100644 --- a/biology/star/Makefile +++ b/biology/star/Makefile @@ -2,6 +2,7 @@ PORTNAME= STAR DISTVERSION= 2.7.3a +PORTREVISION= 1 CATEGORIES= biology PKGNAMEPREFIX= rna- @@ -14,7 +15,7 @@ LICENSE_FILE= ${WRKDIR}/STAR-${DISTVERSION}/LICENSE # 64-bit only, needs 16+ GiB RAM for typical eukaryotic genome NOT_FOR_ARCHS= i386 powerpc -USES= compiler:openmp gmake +USES= compiler:c++11-lang gmake USE_GITHUB= yes GH_ACCOUNT= alexdobin @@ -22,14 +23,7 @@ WRKSRC_SUBDIR= source PLIST_FILES= bin/STAR -.include <bsd.port.pre.mk> - -# Force newer compiler on platforms using GCC 4.2 as base -.if ${CHOSEN_COMPILER_TYPE} == gcc && ${COMPILER_VERSION} <= 42 -USE_GCC= yes -.endif - do-install: ${INSTALL_PROGRAM} ${WRKSRC}/STAR ${STAGEDIR}${PREFIX}/bin -.include <bsd.port.post.mk> +.include <bsd.port.mk> diff --git a/biology/star/files/patch-Makefile b/biology/star/files/patch-Makefile index c2034493cad3..99f3c4aa1237 100644 --- a/biology/star/files/patch-Makefile +++ b/biology/star/files/patch-Makefile @@ -1,17 +1,23 @@ ---- Makefile.orig 2019-03-28 20:48:16 UTC +--- Makefile.orig 2019-10-08 19:10:51 UTC +++ Makefile -@@ -20,11 +20,11 @@ LDFLAGS_gdb := $(LDFLAGS_shared) +@@ -20,11 +20,16 @@ LDFLAGS_gdb := $(LDFLAGS_shared) COMPTIMEPLACE := -D'COMPILATION_TIME_PLACE="$(shell echo `date` $(HOSTNAME):`pwd`)"' -CXXFLAGS_common := -pipe -std=c++11 -Wall -Wextra -fopenmp $(COMPTIMEPLACE) -CXXFLAGS_main := -O3 $(CXXFLAGS_common) -+CXXFLAGS_common := -std=c++11 -Wall -Wextra -fopenmp $(COMPTIMEPLACE) -+CXXFLAGS_main += $(CXXFLAGS_common) - CXXFLAGS_gdb := -O0 -g $(CXXFLAGS_common) +-CXXFLAGS_gdb := -O0 -g $(CXXFLAGS_common) ++# Defaults, overridden by make arguments or environment ++CXXFLAGS ?= -pipe -O3 -Wall -Wextra ++CFLAGS ?= -pipe -O3 -Wall -Wextra -CFLAGS := -O3 -pipe -Wall -Wextra $(CFLAGS) -+CFLAGS += -Wall -Wextra ++# Unconditionally set essential flags ++CXXFLAGS_common := -std=c++11 -fopenmp $(COMPTIMEPLACE) ++CXXFLAGS_main += $(CXXFLAGS_common) ++ ++# -O or -O2 should work fine with gdb as well ++CXXFLAGS_gdb := -O0 -g $(CXXFLAGS_common) ########################################################################################################## |