diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2020-11-09 00:35:58 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2020-11-09 00:35:58 +0000 |
| commit | 899ed588d961ba4465259e06f78937f6f180031a (patch) | |
| tree | 4dd372db391dfd7f80c54db437fbe056466199e1 /biology/vt | |
| parent | 98488e5fad6963bd5b7c502ae526f214e60d111b (diff) | |
| download | ports-899ed588d961ba4465259e06f78937f6f180031a.tar.gz ports-899ed588d961ba4465259e06f78937f6f180031a.zip | |
biology/vt: Fix build with htslib 1.11
Reported by: fallout
Notes
Notes:
svn path=/head/; revision=554660
Diffstat (limited to 'biology/vt')
| -rw-r--r-- | biology/vt/Makefile | 4 | ||||
| -rw-r--r-- | biology/vt/files/patch-hts__utils.h | 11 |
2 files changed, 13 insertions, 2 deletions
diff --git a/biology/vt/Makefile b/biology/vt/Makefile index f4fcf29ae15f..95d9ed794d9d 100644 --- a/biology/vt/Makefile +++ b/biology/vt/Makefile @@ -2,7 +2,7 @@ PORTNAME= vt DISTVERSION= 0.57721 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -10,7 +10,7 @@ COMMENT= Discovers short variants from Next Generation Sequencing data LICENSE= MIT -LIB_DEPENDS= libhts.so.3:biology/htslib \ +LIB_DEPENDS= libhts.so:biology/htslib \ libsvm.so:science/libsvm \ libdeflate.so:archivers/libdeflate \ libcurl.so:ftp/curl diff --git a/biology/vt/files/patch-hts__utils.h b/biology/vt/files/patch-hts__utils.h new file mode 100644 index 000000000000..6d5bdb4c3c3c --- /dev/null +++ b/biology/vt/files/patch-hts__utils.h @@ -0,0 +1,11 @@ +--- hts_utils.h.orig 2020-11-08 22:09:58 UTC ++++ hts_utils.h +@@ -47,7 +47,7 @@ typedef struct { + + KHASH_MAP_INIT_STR(s, faidx1_t) + +-struct __faidx_t { ++struct faidx_t { + BGZF *bgzf; + int n, m; + char **name; |