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authorJason W. Bacon <jwb@FreeBSD.org>2020-11-15 18:50:17 +0000
committerJason W. Bacon <jwb@FreeBSD.org>2020-11-15 18:50:17 +0000
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parentbf689b58be54f0891487378c04ee69b443c95ca1 (diff)
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biology/pooler: Optimise DNA sequencing primer-set combinations
Optimise combinations of primers and minimise the formation of dimers in multiplexed PCR. Primer Pooler can: * Check through each proposed pool for combinations that are likely to form dimers * Automatically move prospective amplicons between proposed pools to reduce dimer formation * Automatically search the genome sequence to find which amplicons overlap, and place their corresponding primers in separate pools * Optionally keep pool sizes within a specified range * Handle thousands of primers without being slow (useful for high-throughput sequencing applications) * Do all of the above with degenerate primers too. WWW: http://ssb22.user.srcf.net/pooler/ PR: ports/251065 Submitted by: Silas S. Brown <silas-freebsd@flatline.org.uk>
Notes
Notes: svn path=/head/; revision=555418
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