2 files changed, 345 insertions, 337 deletions

diff --git a/math/jags/Makefile b/math/jags/Makefile
index bb28931d7cac..ba056116bd24 100644
--- a/math/jags/Makefile
+++ b/math/jags/Makefile
@@ -8,6 +8,7 @@
 
 PORTNAME=	jags
 PORTVERSION=	1.0.3
+PORTREVISION=	1
 CATEGORIES=	math
 MASTER_SITES=	http://www-fis.iarc.fr/~martyn/software/jags/
 DISTNAME=	${PORTNAME:U}-${PORTVERSION}
@@ -33,14 +34,21 @@ CONFIGURE_ARGS=	--with-lapack=-llapack --with-blas=-lblas
 DIST_SUBDIR=	${PORTNAME}
 
 GNU_CONFIGURE=	yes
-CONFIGURE_ENV=	LDFLAGS=-L${PREFIX}/lib
+CONFIGURE_ENV=	LDFLAGS=-L${LOCALBASE}/lib
 USE_FORTRAN=	yes
+USE_LDCONFIG=	yes
+
+post-patch:
+	${REINPLACE_CMD} -e 's|[(]libdir[)]/pkgconfig|(prefix)/libdata/pkgconfig|g' \
+		${WRKSRC}/etc/Makefile.in
 
 post-install:
 .if !defined(NOPORTDOCS)
 	${MKDIR} ${DOCSDIR}
 	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/jags_user_manual.pdf \
 		${DOCSDIR}
+.endif
+.if !defined(NOPORTEXAMPLES)
 	${MKDIR} ${EXAMPLESDIR}
 	( cd ${EXAMPLESDIR}; \
 	  ${PAX} -rzf ${DISTDIR}/${DIST_SUBDIR}/classic-bugs.tar.gz \
diff --git a/math/jags/pkg-plist b/math/jags/pkg-plist
index 622ac5b60d1b..fb4ef5bd3664 100644
--- a/math/jags/pkg-plist
+++ b/math/jags/pkg-plist
@@ -70,344 +70,344 @@ lib/libjags.so.1
 lib/libjrmath.la
 lib/libjrmath.so
 lib/libjrmath.so.0
-lib/pkgconfig/jags.pc
+libdata/pkgconfig/jags.pc
 libexec/jags-terminal
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+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/bench-test3.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/jaw-constant.bug
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/jaw-data.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/jaw-inits.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/jaw-linear.bug
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/jaw-quadratic.bug
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/test1.cmd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/test2.cmd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/test3.cmd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/bench-test1.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/bench-test2.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/mvotree-data.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/mvotree-inits.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/mvotree.bug
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/orange-data.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/orange-inits.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/otree.bug
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/otree.dat
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/otree.in
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/test1.cmd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/test2.cmd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/pigs/bench-test1.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/pigs/pigs-data.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/pigs/pigs-inits.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/pigs/pigs.bug
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/pigs/test1.cmd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/bench-test1.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/schools-data.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/schools-inits.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/schools.bug
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/schools.dat
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/test.bug
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/test1.cmd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/ReadMe
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/bench-test3.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/bench-test4.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/notest1.cmd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/notest2.cmd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-data.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits1.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits2.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits3.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits4.R
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant.bug
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant2.bug
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/test3.cmd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/test4.cmd
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/stagnant
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/schools
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/pigs
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/orange
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/jaw
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/ice
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/hearts
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/eyes
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/dugongs
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/cervix
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/birats
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/biops
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/beetles
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/asia
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/alli
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/air
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/seeds
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/salm
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/rats
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/pump
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/oxford
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/mice
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/lsat
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/litters
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/line
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/leuk
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/kidney
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/inhaler
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/equiv
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/epil
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/dyes
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/bones
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/blocker
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/R
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
 %%PORTDOCS%%@dirrm %%DOCSDIR%%
 @dirrm lib/JAGS/modules
 @dirrm lib/JAGS