New port: science/opensim-core: Software for modeling of musculoskeletal structures

7 files changed, 469 insertions, 0 deletions

diff --git a/science/opensim-core/Makefile b/science/opensim-core/Makefile
new file mode 100644
index 000000000000..a82a54e8977d
--- /dev/null
+++ b/science/opensim-core/Makefile
@@ -0,0 +1,39 @@
+# $FreeBSD$
+
+PORTNAME=	OpenSim
+DISTVERSION=	4.0
+CATEGORIES=	science
+PKGNAMESUFFIX=	-core
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Software for modeling of musculoskeletal structures
+
+LICENSE=	APACHE20
+LICENSE_FILE=	${WRKSRC}/LICENSE.txt
+
+LIB_DEPENDS=	libdocopt.so:devel/docopt.cpp \
+		libSimTKcommon.so:science/simbody
+
+USES=		blaslapack:openblas cmake:outsource compiler:c++11-lib fortran gl # fortran only for simbody/openblas
+USE_GITHUB=	yes
+GH_ACCOUNT=	${PORTNAME:tl}-org
+GH_PROJECT=	${PORTNAME:tl}-core
+USE_GL=		gl glu glut
+USE_XORG=	xi xmu
+USE_LDCONFIG=	yes
+
+CXXFLAGS+=	-I${LOCALBASE}/include/docopt
+CONFIGURE_ENV+=	SIMBODY_HOME=${LOCALBASE}
+CMAKE_OFF=	OPENSIM_COPY_DEPENDENCIES DO_TESTING
+
+OPTIONS_DEFINE=		DOCS
+DOCS_CMAKE_BOOL=	INSTALL_DOCS
+PORTDOCS=		*
+
+do-test: # 4 testcases are known to fail: https://github.com/opensim-org/opensim-core/issues/2379
+	@cd ${BUILD_WRKSRC} && \
+		${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DDO_TESTING=ON ${CMAKE_SOURCE_PATH} && \
+		${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \
+		${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test
+
+.include <bsd.port.mk>
diff --git a/science/opensim-core/distinfo b/science/opensim-core/distinfo
new file mode 100644
index 000000000000..e0b2b1446886
--- /dev/null
+++ b/science/opensim-core/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1542256927
+SHA256 (opensim-org-opensim-core-4.0_GH0.tar.gz) = 3d9be82786d3040368b862ef4cf192bfdd34b996cab53aba6d86b6e74f6ba0d1
+SIZE (opensim-org-opensim-core-4.0_GH0.tar.gz) = 45202145
diff --git a/science/opensim-core/files/patch-Applications_opensim-cmd_CMakeLists.txt b/science/opensim-core/files/patch-Applications_opensim-cmd_CMakeLists.txt
new file mode 100644
index 000000000000..bb103041fd46
--- /dev/null
+++ b/science/opensim-core/files/patch-Applications_opensim-cmd_CMakeLists.txt
@@ -0,0 +1,11 @@
+--- Applications/opensim-cmd/CMakeLists.txt.orig	2018-11-15 17:30:25 UTC
++++ Applications/opensim-cmd/CMakeLists.txt
+@@ -20,7 +20,7 @@ OpenSimAddApplication(NAME opensim-cmd
+             parse_arguments.h
+     )
+ 
+-target_link_libraries(opensim-cmd docopt_s)
++target_link_libraries(opensim-cmd docopt)
+ 
+ if(BUILD_TESTING)
+     subdirs(test)
diff --git a/science/opensim-core/files/patch-CMakeLists.txt b/science/opensim-core/files/patch-CMakeLists.txt
new file mode 100644
index 000000000000..7a2988a5e0ed
--- /dev/null
+++ b/science/opensim-core/files/patch-CMakeLists.txt
@@ -0,0 +1,23 @@
+--- CMakeLists.txt.orig	2018-11-12 23:49:48 UTC
++++ CMakeLists.txt
+@@ -766,8 +766,10 @@ endif(WIN32)
+ 
+ 
+ ## The following are required to uses Dart and the Cdash dashboard per Jesse
+-enable_testing()
+-include(CTest)
++if (DO_TESTING)
++    enable_testing()
++    include(CTest)
++endif()
+ 
+ # Sets the number of concurrent jobs that testing can use.
+ if(MSVC OR XCODE)
+@@ -834,4 +836,6 @@ endif()
+ add_subdirectory(Bindings)
+ 
+ add_subdirectory(cmake)
+-add_subdirectory(doc)
++if (INSTALL_DOCS)
++    add_subdirectory(doc)
++endif()
diff --git a/science/opensim-core/files/patch-OpenSim_Common_IO.cpp b/science/opensim-core/files/patch-OpenSim_Common_IO.cpp
new file mode 100644
index 000000000000..67223730d0c3
--- /dev/null
+++ b/science/opensim-core/files/patch-OpenSim_Common_IO.cpp
@@ -0,0 +1,38 @@
+--- OpenSim/Common/IO.cpp.orig	2018-11-15 09:02:08 UTC
++++ OpenSim/Common/IO.cpp
+@@ -33,7 +33,7 @@
+ #include <climits>
+ 
+ #include "IO.h"
+-#if defined(__linux__) || defined(__APPLE__)
++#if defined(__linux__) || defined(__APPLE__) || defined(__FreeBSD__)
+     #include <sys/stat.h>
+     #include <sys/types.h>
+ #elif defined(_MSC_VER)
+@@ -476,7 +476,7 @@ int IO::
+ makeDir(const string &aDirName)
+ {
+ 
+-#if defined __linux__ || defined __APPLE__
++#if defined __linux__ || defined __APPLE__ || defined __FreeBSD__
+     return mkdir(aDirName.c_str(),S_IRWXU);
+ #else
+     return _mkdir(aDirName.c_str());
+@@ -491,7 +491,7 @@ int IO::
+ chDir(const string &aDirName)
+ {
+ 
+-#if defined __linux__ || defined __APPLE__
++#if defined __linux__ || defined __APPLE__ || defined __FreeBSD__
+     return chdir(aDirName.c_str()); 
+ #else
+     return _chdir(aDirName.c_str());
+@@ -507,7 +507,7 @@ string IO::
+ getCwd()
+ {
+     char buffer[PATH_MAX];
+-#if defined __linux__ || defined __APPLE__
++#if defined __linux__ || defined __APPLE__ || defined __FreeBSD__
+     auto ptr = getcwd(buffer, PATH_MAX); (void)ptr;
+ #else
+     _getcwd(buffer, PATH_MAX);
diff --git a/science/opensim-core/pkg-descr b/science/opensim-core/pkg-descr
new file mode 100644
index 000000000000..2fef9654e639
--- /dev/null
+++ b/science/opensim-core/pkg-descr
@@ -0,0 +1,6 @@
+OpenSim is software that lets users develop models of musculoskeletal structures
+and create dynamic simulations of movement.
+
+It contains SimTK OpenSim C++ libraries and command-line applications.
+
+WWW: http://opensim.stanford.edu/
diff --git a/science/opensim-core/pkg-plist b/science/opensim-core/pkg-plist
new file mode 100644
index 000000000000..b754d832633f
--- /dev/null
+++ b/science/opensim-core/pkg-plist
@@ -0,0 +1,349 @@
+bin/opensim-cmd
+%%ETCDIR%%_buildinfo.txt
+include/OpenSim/Actuators/ActiveForceLengthCurve.h
+include/OpenSim/Actuators/BodyActuator.h
+include/OpenSim/Actuators/ClutchedPathSpring.h
+include/OpenSim/Actuators/ConstantMuscleActivation.h
+include/OpenSim/Actuators/CoordinateActuator.h
+include/OpenSim/Actuators/Delp1990Muscle_Deprecated.h
+include/OpenSim/Actuators/FiberCompressiveForceCosPennationCurve.h
+include/OpenSim/Actuators/FiberCompressiveForceLengthCurve.h
+include/OpenSim/Actuators/FiberForceLengthCurve.h
+include/OpenSim/Actuators/FirstOrderMuscleActivationDynamics.h
+include/OpenSim/Actuators/ForceVelocityCurve.h
+include/OpenSim/Actuators/ForceVelocityInverseCurve.h
+include/OpenSim/Actuators/McKibbenActuator.h
+include/OpenSim/Actuators/Millard2012AccelerationMuscle.h
+include/OpenSim/Actuators/Millard2012EquilibriumMuscle.h
+include/OpenSim/Actuators/MuscleActivationDynamics.h
+include/OpenSim/Actuators/MuscleFirstOrderActivationDynamicModel.h
+include/OpenSim/Actuators/MuscleFixedWidthPennationModel.h
+include/OpenSim/Actuators/MuscleSecondOrderActivationDynamicModel.h
+include/OpenSim/Actuators/PointActuator.h
+include/OpenSim/Actuators/PointToPointActuator.h
+include/OpenSim/Actuators/RegisterTypes_osimActuators.h
+include/OpenSim/Actuators/RigidTendonMuscle.h
+include/OpenSim/Actuators/Schutte1993Muscle_Deprecated.h
+include/OpenSim/Actuators/SpringGeneralizedForce.h
+include/OpenSim/Actuators/TendonForceLengthCurve.h
+include/OpenSim/Actuators/Thelen2003Muscle.h
+include/OpenSim/Actuators/Thelen2003Muscle_Deprecated.h
+include/OpenSim/Actuators/TorqueActuator.h
+include/OpenSim/Actuators/ZerothOrderMuscleActivationDynamics.h
+include/OpenSim/Actuators/osimActuators.h
+include/OpenSim/Actuators/osimActuatorsDLL.h
+include/OpenSim/Analyses/Actuation.h
+include/OpenSim/Analyses/BodyKinematics.h
+include/OpenSim/Analyses/ForceReporter.h
+include/OpenSim/Analyses/InducedAccelerations.h
+include/OpenSim/Analyses/InducedAccelerationsSolver.h
+include/OpenSim/Analyses/InverseDynamics.h
+include/OpenSim/Analyses/JointReaction.h
+include/OpenSim/Analyses/Kinematics.h
+include/OpenSim/Analyses/MuscleAnalysis.h
+include/OpenSim/Analyses/OutputReporter.h
+include/OpenSim/Analyses/PointKinematics.h
+include/OpenSim/Analyses/ProbeReporter.h
+include/OpenSim/Analyses/RegisterTypes_osimAnalyses.h
+include/OpenSim/Analyses/StatesReporter.h
+include/OpenSim/Analyses/StaticOptimization.h
+include/OpenSim/Analyses/StaticOptimizationTarget.h
+include/OpenSim/Analyses/osimAnalyses.h
+include/OpenSim/Analyses/osimAnalysesDLL.h
+include/OpenSim/Common/About.h
+include/OpenSim/Common/AbstractDataTable.h
+include/OpenSim/Common/AbstractProperty.h
+include/OpenSim/Common/Adapters.h
+include/OpenSim/Common/Array.h
+include/OpenSim/Common/ArrayPtrs.h
+include/OpenSim/Common/CSVFileAdapter.h
+include/OpenSim/Common/Component.h
+include/OpenSim/Common/ComponentList.h
+include/OpenSim/Common/ComponentOutput.h
+include/OpenSim/Common/ComponentPath.h
+include/OpenSim/Common/ComponentSocket.h
+include/OpenSim/Common/Constant.h
+include/OpenSim/Common/DataAdapter.h
+include/OpenSim/Common/DataTable.h
+include/OpenSim/Common/DebugUtilities.h
+include/OpenSim/Common/DelimFileAdapter.h
+include/OpenSim/Common/Event.h
+include/OpenSim/Common/Exception.h
+include/OpenSim/Common/FileAdapter.h
+include/OpenSim/Common/Function.h
+include/OpenSim/Common/FunctionAdapter.h
+include/OpenSim/Common/FunctionSet.h
+include/OpenSim/Common/GCVSpline.h
+include/OpenSim/Common/GCVSplineSet.h
+include/OpenSim/Common/IO.h
+include/OpenSim/Common/LinearFunction.h
+include/OpenSim/Common/Lmdif.h
+include/OpenSim/Common/LoadOpenSimLibrary.h
+include/OpenSim/Common/LogCallback.h
+include/OpenSim/Common/LogManager.h
+include/OpenSim/Common/MarkerData.h
+include/OpenSim/Common/MarkerFrame.h
+include/OpenSim/Common/ModelDisplayHints.h
+include/OpenSim/Common/Mtx.h
+include/OpenSim/Common/MultiplierFunction.h
+include/OpenSim/Common/Object.h
+include/OpenSim/Common/ObjectGroup.h
+include/OpenSim/Common/OptimizationTarget.h
+include/OpenSim/Common/Path.h
+include/OpenSim/Common/PiecewiseConstantFunction.h
+include/OpenSim/Common/PiecewiseLinearFunction.h
+include/OpenSim/Common/PolynomialFunction.h
+include/OpenSim/Common/Property.h
+include/OpenSim/Common/PropertyBool.h
+include/OpenSim/Common/PropertyBoolArray.h
+include/OpenSim/Common/PropertyDbl.h
+include/OpenSim/Common/PropertyDblArray.h
+include/OpenSim/Common/PropertyDblVec.h
+include/OpenSim/Common/PropertyGroup.h
+include/OpenSim/Common/PropertyInt.h
+include/OpenSim/Common/PropertyIntArray.h
+include/OpenSim/Common/PropertyObj.h
+include/OpenSim/Common/PropertyObjArray.h
+include/OpenSim/Common/PropertyObjPtr.h
+include/OpenSim/Common/PropertySet.h
+include/OpenSim/Common/PropertyStr.h
+include/OpenSim/Common/PropertyStrArray.h
+include/OpenSim/Common/PropertyTable.h
+include/OpenSim/Common/PropertyTransform.h
+include/OpenSim/Common/Property_Deprecated.h
+include/OpenSim/Common/RegisterTypes_osimCommon.h
+include/OpenSim/Common/Reporter.h
+include/OpenSim/Common/RootSolver.h
+include/OpenSim/Common/STOFileAdapter.h
+include/OpenSim/Common/Scale.h
+include/OpenSim/Common/ScaleSet.h
+include/OpenSim/Common/SegmentedQuinticBezierToolkit.h
+include/OpenSim/Common/Set.h
+include/OpenSim/Common/Signal.h
+include/OpenSim/Common/SignalGenerator.h
+include/OpenSim/Common/SimmIO.h
+include/OpenSim/Common/SimmMacros.h
+include/OpenSim/Common/SimmSpline.h
+include/OpenSim/Common/Sine.h
+include/OpenSim/Common/SmoothSegmentedFunction.h
+include/OpenSim/Common/SmoothSegmentedFunctionFactory.h
+include/OpenSim/Common/StateVector.h
+include/OpenSim/Common/StepFunction.h
+include/OpenSim/Common/Storage.h
+include/OpenSim/Common/StorageFactory.h
+include/OpenSim/Common/StorageInterface.h
+include/OpenSim/Common/TRCFileAdapter.h
+include/OpenSim/Common/TableSource.h
+include/OpenSim/Common/TimeSeriesTable.h
+include/OpenSim/Common/Units.h
+include/OpenSim/Common/ValueArray.h
+include/OpenSim/Common/ValueArrayDictionary.h
+include/OpenSim/Common/VectorFunction.h
+include/OpenSim/Common/VectorFunctionUncoupledNxN.h
+include/OpenSim/Common/XMLDocument.h
+include/OpenSim/Common/XYFunctionInterface.h
+include/OpenSim/Common/gcvspl.h
+include/OpenSim/Common/osimCommon.h
+include/OpenSim/Common/osimCommonDLL.h
+include/OpenSim/Common/osimCommonTemplates.h
+include/OpenSim/ExampleComponents/HopperDevice.h
+include/OpenSim/ExampleComponents/RegisterTypes_osimExampleComponents.h
+include/OpenSim/ExampleComponents/ToyPropMyoController.h
+include/OpenSim/ExampleComponents/ToyReflexController.h
+include/OpenSim/ExampleComponents/osimExampleComponentsDLL.h
+include/OpenSim/Lepton.h
+include/OpenSim/OpenSim.h
+include/OpenSim/Simulation/AssemblySolver.h
+include/OpenSim/Simulation/Control/Control.h
+include/OpenSim/Simulation/Control/ControlConstant.h
+include/OpenSim/Simulation/Control/ControlLinear.h
+include/OpenSim/Simulation/Control/ControlLinearNode.h
+include/OpenSim/Simulation/Control/ControlSet.h
+include/OpenSim/Simulation/Control/ControlSetController.h
+include/OpenSim/Simulation/Control/Controller.h
+include/OpenSim/Simulation/Control/PrescribedController.h
+include/OpenSim/Simulation/Control/TrackingController.h
+include/OpenSim/Simulation/CoordinateReference.h
+include/OpenSim/Simulation/InverseDynamicsSolver.h
+include/OpenSim/Simulation/InverseKinematicsSolver.h
+include/OpenSim/Simulation/Manager/Manager.h
+include/OpenSim/Simulation/MarkersReference.h
+include/OpenSim/Simulation/Model/AbstractPathPoint.h
+include/OpenSim/Simulation/Model/AbstractTool.h
+include/OpenSim/Simulation/Model/ActivationFiberLengthMuscle.h
+include/OpenSim/Simulation/Model/ActivationFiberLengthMuscle_Deprecated.h
+include/OpenSim/Simulation/Model/Actuator.h
+include/OpenSim/Simulation/Model/ActuatorForceProbe.h
+include/OpenSim/Simulation/Model/ActuatorPowerProbe.h
+include/OpenSim/Simulation/Model/Analysis.h
+include/OpenSim/Simulation/Model/AnalysisSet.h
+include/OpenSim/Simulation/Model/Appearance.h
+include/OpenSim/Simulation/Model/Bhargava2004MuscleMetabolicsProbe.h
+include/OpenSim/Simulation/Model/BodyScale.h
+include/OpenSim/Simulation/Model/BodyScaleSet.h
+include/OpenSim/Simulation/Model/BodySet.h
+include/OpenSim/Simulation/Model/BushingForce.h
+include/OpenSim/Simulation/Model/CMCActuatorSubsystem.h
+include/OpenSim/Simulation/Model/ComponentSet.h
+include/OpenSim/Simulation/Model/Condition.h
+include/OpenSim/Simulation/Model/ConditionalPathPoint.h
+include/OpenSim/Simulation/Model/ConstraintSet.h
+include/OpenSim/Simulation/Model/ContactGeometry.h
+include/OpenSim/Simulation/Model/ContactGeometrySet.h
+include/OpenSim/Simulation/Model/ContactHalfSpace.h
+include/OpenSim/Simulation/Model/ContactMesh.h
+include/OpenSim/Simulation/Model/ContactSphere.h
+include/OpenSim/Simulation/Model/ControllerSet.h
+include/OpenSim/Simulation/Model/CoordinateLimitForce.h
+include/OpenSim/Simulation/Model/CoordinateSet.h
+include/OpenSim/Simulation/Model/ElasticFoundationForce.h
+include/OpenSim/Simulation/Model/ExpressionBasedBushingForce.h
+include/OpenSim/Simulation/Model/ExpressionBasedCoordinateForce.h
+include/OpenSim/Simulation/Model/ExpressionBasedPointToPointForce.h
+include/OpenSim/Simulation/Model/ExternalForce.h
+include/OpenSim/Simulation/Model/ExternalLoads.h
+include/OpenSim/Simulation/Model/Force.h
+include/OpenSim/Simulation/Model/ForceAdapter.h
+include/OpenSim/Simulation/Model/ForceSet.h
+include/OpenSim/Simulation/Model/Frame.h
+include/OpenSim/Simulation/Model/FunctionBasedBushingForce.h
+include/OpenSim/Simulation/Model/FunctionThresholdCondition.h
+include/OpenSim/Simulation/Model/Geometry.h
+include/OpenSim/Simulation/Model/GeometryPath.h
+include/OpenSim/Simulation/Model/Ground.h
+include/OpenSim/Simulation/Model/HuntCrossleyForce.h
+include/OpenSim/Simulation/Model/JointInternalPowerProbe.h
+include/OpenSim/Simulation/Model/JointSet.h
+include/OpenSim/Simulation/Model/Ligament.h
+include/OpenSim/Simulation/Model/Marker.h
+include/OpenSim/Simulation/Model/MarkerSet.h
+include/OpenSim/Simulation/Model/Model.h
+include/OpenSim/Simulation/Model/ModelComponent.h
+include/OpenSim/Simulation/Model/ModelComponentSet.h
+include/OpenSim/Simulation/Model/ModelVisualPreferences.h
+include/OpenSim/Simulation/Model/ModelVisualizer.h
+include/OpenSim/Simulation/Model/MovingPathPoint.h
+include/OpenSim/Simulation/Model/Muscle.h
+include/OpenSim/Simulation/Model/MuscleActiveFiberPowerProbe.h
+include/OpenSim/Simulation/Model/OffsetFrame.h
+include/OpenSim/Simulation/Model/PathActuator.h
+include/OpenSim/Simulation/Model/PathPoint.h
+include/OpenSim/Simulation/Model/PathPointSet.h
+include/OpenSim/Simulation/Model/PathSpring.h
+include/OpenSim/Simulation/Model/PhysicalFrame.h
+include/OpenSim/Simulation/Model/PhysicalOffsetFrame.h
+include/OpenSim/Simulation/Model/Point.h
+include/OpenSim/Simulation/Model/PointForceDirection.h
+include/OpenSim/Simulation/Model/PointToPointSpring.h
+include/OpenSim/Simulation/Model/PrescribedForce.h
+include/OpenSim/Simulation/Model/Probe.h
+include/OpenSim/Simulation/Model/ProbeSet.h
+include/OpenSim/Simulation/Model/Station.h
+include/OpenSim/Simulation/Model/SystemEnergyProbe.h
+include/OpenSim/Simulation/Model/TwoFrameLinker.h
+include/OpenSim/Simulation/Model/Umberger2010MuscleMetabolicsProbe.h
+include/OpenSim/Simulation/MomentArmSolver.h
+include/OpenSim/Simulation/Reference.h
+include/OpenSim/Simulation/RegisterTypes_osimSimulation.h
+include/OpenSim/Simulation/SimbodyEngine/BallJoint.h
+include/OpenSim/Simulation/SimbodyEngine/Body.h
+include/OpenSim/Simulation/SimbodyEngine/ConstantDistanceConstraint.h
+include/OpenSim/Simulation/SimbodyEngine/Constraint.h
+include/OpenSim/Simulation/SimbodyEngine/Coordinate.h
+include/OpenSim/Simulation/SimbodyEngine/CoordinateCouplerConstraint.h
+include/OpenSim/Simulation/SimbodyEngine/CustomJoint.h
+include/OpenSim/Simulation/SimbodyEngine/EllipsoidJoint.h
+include/OpenSim/Simulation/SimbodyEngine/FreeJoint.h
+include/OpenSim/Simulation/SimbodyEngine/GimbalJoint.h
+include/OpenSim/Simulation/SimbodyEngine/Joint.h
+include/OpenSim/Simulation/SimbodyEngine/PinJoint.h
+include/OpenSim/Simulation/SimbodyEngine/PlanarJoint.h
+include/OpenSim/Simulation/SimbodyEngine/PointConstraint.h
+include/OpenSim/Simulation/SimbodyEngine/PointOnLineConstraint.h
+include/OpenSim/Simulation/SimbodyEngine/RollingOnSurfaceConstraint.h
+include/OpenSim/Simulation/SimbodyEngine/SimbodyEngine.h
+include/OpenSim/Simulation/SimbodyEngine/SliderJoint.h
+include/OpenSim/Simulation/SimbodyEngine/SpatialTransform.h
+include/OpenSim/Simulation/SimbodyEngine/TransformAxis.h
+include/OpenSim/Simulation/SimbodyEngine/UnilateralConstraint.h
+include/OpenSim/Simulation/SimbodyEngine/UniversalJoint.h
+include/OpenSim/Simulation/SimbodyEngine/WeldConstraint.h
+include/OpenSim/Simulation/SimbodyEngine/WeldJoint.h
+include/OpenSim/Simulation/SimulationUtilities.h
+include/OpenSim/Simulation/Solver.h
+include/OpenSim/Simulation/StatesTrajectory.h
+include/OpenSim/Simulation/StatesTrajectoryReporter.h
+include/OpenSim/Simulation/Wrap/PathWrap.h
+include/OpenSim/Simulation/Wrap/PathWrapPoint.h
+include/OpenSim/Simulation/Wrap/PathWrapSet.h
+include/OpenSim/Simulation/Wrap/WrapCylinder.h
+include/OpenSim/Simulation/Wrap/WrapCylinderObst.h
+include/OpenSim/Simulation/Wrap/WrapDoubleCylinderObst.h
+include/OpenSim/Simulation/Wrap/WrapEllipsoid.h
+include/OpenSim/Simulation/Wrap/WrapMath.h
+include/OpenSim/Simulation/Wrap/WrapObject.h
+include/OpenSim/Simulation/Wrap/WrapObjectSet.h
+include/OpenSim/Simulation/Wrap/WrapResult.h
+include/OpenSim/Simulation/Wrap/WrapSphere.h
+include/OpenSim/Simulation/Wrap/WrapSphereObst.h
+include/OpenSim/Simulation/Wrap/WrapTorus.h
+include/OpenSim/Simulation/osimSimulation.h
+include/OpenSim/Simulation/osimSimulationDLL.h
+include/OpenSim/Tools/ActuatorForceTarget.h
+include/OpenSim/Tools/ActuatorForceTargetFast.h
+include/OpenSim/Tools/AnalyzeTool.h
+include/OpenSim/Tools/CMC.h
+include/OpenSim/Tools/CMCTool.h
+include/OpenSim/Tools/CMC_Joint.h
+include/OpenSim/Tools/CMC_Orientation.h
+include/OpenSim/Tools/CMC_Point.h
+include/OpenSim/Tools/CMC_Task.h
+include/OpenSim/Tools/CMC_TaskSet.h
+include/OpenSim/Tools/CorrectionController.h
+include/OpenSim/Tools/DynamicsTool.h
+include/OpenSim/Tools/ForwardTool.h
+include/OpenSim/Tools/GenericModelMaker.h
+include/OpenSim/Tools/IKCoordinateTask.h
+include/OpenSim/Tools/IKMarkerTask.h
+include/OpenSim/Tools/IKTask.h
+include/OpenSim/Tools/IKTaskSet.h
+include/OpenSim/Tools/InverseDynamicsTool.h
+include/OpenSim/Tools/InverseKinematicsTool.h
+include/OpenSim/Tools/MarkerPair.h
+include/OpenSim/Tools/MarkerPairSet.h
+include/OpenSim/Tools/MarkerPlacer.h
+include/OpenSim/Tools/Measurement.h
+include/OpenSim/Tools/MeasurementSet.h
+include/OpenSim/Tools/ModelScaler.h
+include/OpenSim/Tools/MuscleStateTrackingTask.h
+include/OpenSim/Tools/RRATool.h
+include/OpenSim/Tools/RegisterTypes_osimTools.h
+include/OpenSim/Tools/SMC_Joint.h
+include/OpenSim/Tools/ScaleTool.h
+include/OpenSim/Tools/StateTrackingTask.h
+include/OpenSim/Tools/Tool.h
+include/OpenSim/Tools/TrackingTask.h
+include/OpenSim/Tools/VectorFunctionForActuators.h
+include/OpenSim/Tools/osimTools.h
+include/OpenSim/Tools/osimToolsDLL.h
+include/OpenSim/lepton/CompiledExpression.h
+include/OpenSim/lepton/CustomFunction.h
+include/OpenSim/lepton/Exception.h
+include/OpenSim/lepton/ExpressionProgram.h
+include/OpenSim/lepton/ExpressionTreeNode.h
+include/OpenSim/lepton/Operation.h
+include/OpenSim/lepton/ParsedExpression.h
+include/OpenSim/lepton/Parser.h
+include/OpenSim/lepton/windowsIncludes.h
+lib/cmake/OpenSim/OpenSimConfig.cmake
+lib/cmake/OpenSim/OpenSimConfigVersion.cmake
+lib/cmake/OpenSim/OpenSimTargets-%%CMAKE_BUILD_TYPE%%.cmake
+lib/cmake/OpenSim/OpenSimTargets.cmake
+lib/cmake/OpenSim/SampleCMakeLists.txt
+lib/libosimActuators.so
+lib/libosimAnalyses.so
+lib/libosimCommon.so
+lib/libosimExampleComponents.so
+lib/libosimLepton.so
+lib/libosimSimulation.so
+lib/libosimTools.so