diff options
| author | Yuri Victorovich <yuri@FreeBSD.org> | 2019-06-09 03:26:15 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2019-06-09 03:26:15 +0000 |
| commit | de69d47ef7f58a6a8efb66678dcbd6d8d838c71d (patch) | |
| tree | 9223fa825a4d1e1801f44a9c66baab0cebe361d4 /science/smoldyn | |
| parent | 169bb0b70589710095db2c97a609ee9a2e3ece8b (diff) | |
| download | ports-de69d47ef7f58a6a8efb66678dcbd6d8d838c71d.tar.gz ports-de69d47ef7f58a6a8efb66678dcbd6d8d838c71d.zip | |
New port: science/smoldyn: Biochemical simulator for molecular diffusion, surface interactions
Notes
Notes:
svn path=/head/; revision=503774
Diffstat (limited to 'science/smoldyn')
| -rw-r--r-- | science/smoldyn/Makefile | 22 | ||||
| -rw-r--r-- | science/smoldyn/distinfo | 3 | ||||
| -rw-r--r-- | science/smoldyn/pkg-descr | 15 |
3 files changed, 40 insertions, 0 deletions
diff --git a/science/smoldyn/Makefile b/science/smoldyn/Makefile new file mode 100644 index 000000000000..da9fa31634a6 --- /dev/null +++ b/science/smoldyn/Makefile @@ -0,0 +1,22 @@ +# $FreeBSD$ + +PORTNAME= smoldyn +DISTVERSION= 2.60 +CATEGORIES= science +MASTER_SITES= http://www.smoldyn.org/ + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Biochemical simulator for molecular diffusion, surface interactions + +LICENSE= LGPL3 +LICENSE_FILE= ${WRKSRC}/License.txt + +LIB_DEPENDS= libtiff.so:graphics/tiff + +USES= cmake gl tar:tgz +USE_GL= gl glu glut +USE_XORG= xi xmu + +PLIST_FILES= bin/${PORTNAME} + +.include <bsd.port.mk> diff --git a/science/smoldyn/distinfo b/science/smoldyn/distinfo new file mode 100644 index 000000000000..b2e299595308 --- /dev/null +++ b/science/smoldyn/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1560034820 +SHA256 (smoldyn-2.60.tgz) = 912cfbd2d165070fe7c36542b1c312a8dec100d4979223e63feafc6a201833af +SIZE (smoldyn-2.60.tgz) = 44801998 diff --git a/science/smoldyn/pkg-descr b/science/smoldyn/pkg-descr new file mode 100644 index 000000000000..c25cbc82c478 --- /dev/null +++ b/science/smoldyn/pkg-descr @@ -0,0 +1,15 @@ +Smoldyn is a computer program for cell-scale biochemical simulations. It +simulates each molecule of interest individually to capture natural +stochasticity and to yield nanometer-scale spatial resolution. It treats other +molecules implicitly, enabling it to simulate hundreds of thousands of molecules +over several minutes of real time. Simulated molecules diffuse, react, are +confined by surfaces, and bind to membranes much as they would in a real +biological system. + +Smoldyn is easy to use and easy to install. It is more accurate and faster than +other particle-based simulators. Smoldyn's unique features include: +a "virtual experimenter" who can manipulate or measure the simulated system, +support for spatial compartments, molecules with excluded volume, and +simulations in 1, 2, or 3 dimensions. + +WWW: http://www.smoldyn.org/ |