biology/tinker: Update 7.1.3 -> 8.4.4; Move to science/

Port changes:
* Take maintainership
* Implement the 'benchmarks' target, and stop installing benchmarks
* Add USES=gmake
* Update license
* Change MASTER_SITES and WWW to https
* Silence some commands

7 files changed, 564 insertions, 0 deletions

diff --git a/science/tinker/Makefile b/science/tinker/Makefile
new file mode 100644
index 000000000000..fefd326efc71
--- /dev/null
+++ b/science/tinker/Makefile
@@ -0,0 +1,77 @@
+# Created by: Glenn Johnson
+# $FreeBSD$
+
+PORTNAME=	tinker
+DISTVERSION=	8.4.4
+CATEGORIES=	science
+MASTER_SITES=	https://dasher.wustl.edu/tinker/downloads/
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	General purpose molecular modelling package
+
+LICENSE=	TINKER
+LICENSE_NAME=	TINKER license agreement
+LICENSE_FILE=	${WRKSRC}/doc/license.pdf
+LICENSE_PERMS=	auto-accept # internal academic purposes only, no commercial use
+
+OPTIONS_DEFINE=	OPTIMIZED_FFLAGS DOCS EXAMPLES
+OPTIMIZED_FFLAGS_DESC=	compilation optimizations
+
+WRKSRC=		${WRKDIR}/${PORTNAME}
+BUILD_WRKSRC=	${WRKSRC}/source
+INSTALL_WRKSRC=	${WRKSRC}/source
+
+LIB_DEPENDS=	libfftw3.so:math/fftw3
+
+USES=		fortran gmake
+MAKE_ENV=	HAVE_G2C=yes
+MAKE_ARGS=	RANLIB=ranlib BINDIR=${STAGEDIR}${PREFIX}/bin
+MAKEFILE=	${WRKSRC}/make/Makefile
+EXTRACT_AFTER_ARGS=--exclude fftw --exclude windows --exclude macosx
+
+SUB_FILES=	pkg-message
+
+BINARY_ALIAS=	gfortran=gfortran${GCC_DEFAULT}
+
+PORTDOCS=	*
+PORTEXAMPLES=	*
+
+.include <bsd.port.options.mk>
+
+.if ${PORT_OPTIONS:MOPTIMIZED_FFLAGS}
+FFLAGS+=	-O3 -ffast-math -finline-functions -fomit-frame-pointer -funroll-loops -fexpensive-optimizations
+.if (${ARCH} == "i386")
+FFLAGS+=	-mfancy-math-387 -malign-double
+.endif # i386
+.endif
+
+post-extract:
+	@${RM} ${BUILD_WRKSRC}/*.c
+	@${RM} ${WRKSRC}/other/eopbend.orig
+
+post-patch:
+	@${REINPLACE_CMD} -i '' 's|\.\./bin/|${STAGEDIR}${PREFIX}/bin/|' ${BUILD_WRKSRC}/../bench/bench*.run
+
+post-install:
+	@${MKDIR} ${STAGEDIR}${DATADIR}
+	@${MKDIR} ${STAGEDIR}${DATADIR}/params
+	cd ${WRKSRC}/params && ${INSTALL_DATA} * ${STAGEDIR}${DATADIR}/params
+	@${MKDIR} ${STAGEDIR}${DATADIR}/test
+	cd ${WRKSRC}/test && ${INSTALL_DATA} * ${STAGEDIR}${DATADIR}/test
+
+post-install-DOCS-on:
+	@${MKDIR} ${STAGEDIR}${DOCSDIR}
+	cd ${WRKSRC}/doc && ${INSTALL_DATA} 0README *.pdf ${STAGEDIR}${DOCSDIR}
+
+post-install-EXAMPLES-on:
+	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
+	cd ${WRKSRC}/example && ${INSTALL_DATA} \
+		0README *.make *.dyn *.int *.frac *.key *.seq *.pdb *.xyz \
+		${STAGEDIR}${EXAMPLESDIR}
+
+benchmarks: stage
+.for n in 1 2 3 4 5 6 7 8 9
+	@cd ${BUILD_WRKSRC}/../bench && ./bench${n}.run
+.endfor
+
+.include <bsd.port.mk>
diff --git a/science/tinker/distinfo b/science/tinker/distinfo
new file mode 100644
index 000000000000..d20c59c39ccc
--- /dev/null
+++ b/science/tinker/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1538861663
+SHA256 (tinker-8.4.4.tar.gz) = c263298383bcd5a72f281d25640f7be2e9c465e08c1a61c3c3de59b6bb828da6
+SIZE (tinker-8.4.4.tar.gz) = 35549655
diff --git a/science/tinker/files/patch-make_Makefile b/science/tinker/files/patch-make_Makefile
new file mode 100644
index 000000000000..3e9f9d05450e
--- /dev/null
+++ b/science/tinker/files/patch-make_Makefile
@@ -0,0 +1,255 @@
+--- make/Makefile.orig	2018-10-06 22:01:02 UTC
++++ make/Makefile
+@@ -754,130 +754,130 @@ listing:
+ 	cat *.f *.c > tinker.txt
+ 
+ rename_bin:
+-	mv  alchemy.x    $(BINDIR)/alchemy
+-	mv  analyze.x    $(BINDIR)/analyze
+-	mv  anneal.x     $(BINDIR)/anneal
+-	mv  archive.x    $(BINDIR)/archive
+-	mv  bar.x        $(BINDIR)/bar
+-	mv  correlate.x  $(BINDIR)/correlate
+-	mv  crystal.x    $(BINDIR)/crystal
+-	mv  diffuse.x    $(BINDIR)/diffuse
+-	mv  distgeom.x   $(BINDIR)/distgeom
+-	mv  document.x   $(BINDIR)/document
+-	mv  dynamic.x    $(BINDIR)/dynamic
+-	mv  gda.x        $(BINDIR)/gda
+-	mv  intedit.x    $(BINDIR)/intedit
+-	mv  intxyz.x     $(BINDIR)/intxyz
+-	mv  minimize.x   $(BINDIR)/minimize
+-	mv  minirot.x    $(BINDIR)/minirot
+-	mv  minrigid.x   $(BINDIR)/minrigid
+-	mv  mol2xyz.x    $(BINDIR)/mol2xyz
+-	mv  molxyz.x     $(BINDIR)/molxyz
+-	mv  monte.x      $(BINDIR)/monte
+-	mv  newton.x     $(BINDIR)/newton
+-	mv  newtrot.x    $(BINDIR)/newtrot
+-	mv  nucleic.x    $(BINDIR)/nucleic
+-	mv  optimize.x   $(BINDIR)/optimize
+-	mv  optirot.x    $(BINDIR)/optirot
+-	mv  optrigid.x   $(BINDIR)/optrigid
+-	mv  path.x       $(BINDIR)/path
+-	mv  pdbxyz.x     $(BINDIR)/pdbxyz
+-	mv  polarize.x   $(BINDIR)/polarize
+-	mv  poledit.x    $(BINDIR)/poledit
+-	mv  potential.x  $(BINDIR)/potential
+-	mv  prmedit.x    $(BINDIR)/prmedit
+-	mv  protein.x    $(BINDIR)/protein
+-	mv  pss.x        $(BINDIR)/pss
+-	mv  pssrigid.x   $(BINDIR)/pssrigid
+-	mv  pssrot.x     $(BINDIR)/pssrot
+-	mv  radial.x     $(BINDIR)/radial
+-	mv  saddle.x     $(BINDIR)/saddle
+-	mv  scan.x       $(BINDIR)/scan
+-	mv  sniffer.x    $(BINDIR)/sniffer
+-	mv  spacefill.x  $(BINDIR)/spacefill
+-	mv  spectrum.x   $(BINDIR)/spectrum
+-	mv  superpose.x  $(BINDIR)/superpose
+-	mv  testgrad.x   $(BINDIR)/testgrad
+-	mv  testhess.x   $(BINDIR)/testhess
+-	mv  testpair.x   $(BINDIR)/testpair
+-	mv  testpol.x    $(BINDIR)/testpol
+-	mv  testrot.x    $(BINDIR)/testrot
+-	mv  timer.x      $(BINDIR)/timer
+-	mv  timerot.x    $(BINDIR)/timerot
+-	mv  torsfit.x    $(BINDIR)/torsfit
+-	mv  valence.x    $(BINDIR)/valence
+-	mv  vibbig.x     $(BINDIR)/vibbig
+-	mv  vibrate.x    $(BINDIR)/vibrate
+-	mv  vibrot.x     $(BINDIR)/vibrot
+-	mv  xtalfit.x    $(BINDIR)/xtalfit
+-	mv  xtalmin.x    $(BINDIR)/xtalmin
+-	mv  xyzedit.x    $(BINDIR)/xyzedit
+-	mv  xyzint.x     $(BINDIR)/xyzint
+-	mv  xyzmol2.x    $(BINDIR)/xyzmol2
+-	mv  xyzpdb.x     $(BINDIR)/xyzpdb
++	${BSD_INSTALL_PROGRAM}  alchemy.x    $(BINDIR)/alchemy
++	${BSD_INSTALL_PROGRAM}  analyze.x    $(BINDIR)/analyze
++	${BSD_INSTALL_PROGRAM}  anneal.x     $(BINDIR)/anneal
++	${BSD_INSTALL_PROGRAM}  archive.x    $(BINDIR)/archive
++	${BSD_INSTALL_PROGRAM}  bar.x        $(BINDIR)/bar
++	${BSD_INSTALL_PROGRAM}  correlate.x  $(BINDIR)/correlate
++	${BSD_INSTALL_PROGRAM}  crystal.x    $(BINDIR)/crystal
++	${BSD_INSTALL_PROGRAM}  diffuse.x    $(BINDIR)/diffuse
++	${BSD_INSTALL_PROGRAM}  distgeom.x   $(BINDIR)/distgeom
++	${BSD_INSTALL_PROGRAM}  document.x   $(BINDIR)/document
++	${BSD_INSTALL_PROGRAM}  dynamic.x    $(BINDIR)/dynamic
++	${BSD_INSTALL_PROGRAM}  gda.x        $(BINDIR)/gda
++	${BSD_INSTALL_PROGRAM}  intedit.x    $(BINDIR)/intedit
++	${BSD_INSTALL_PROGRAM}  intxyz.x     $(BINDIR)/intxyz
++	${BSD_INSTALL_PROGRAM}  minimize.x   $(BINDIR)/minimize
++	${BSD_INSTALL_PROGRAM}  minirot.x    $(BINDIR)/minirot
++	${BSD_INSTALL_PROGRAM}  minrigid.x   $(BINDIR)/minrigid
++	${BSD_INSTALL_PROGRAM}  mol2xyz.x    $(BINDIR)/mol2xyz
++	${BSD_INSTALL_PROGRAM}  molxyz.x     $(BINDIR)/molxyz
++	${BSD_INSTALL_PROGRAM}  monte.x      $(BINDIR)/monte
++	${BSD_INSTALL_PROGRAM}  newton.x     $(BINDIR)/newton
++	${BSD_INSTALL_PROGRAM}  newtrot.x    $(BINDIR)/newtrot
++	${BSD_INSTALL_PROGRAM}  nucleic.x    $(BINDIR)/nucleic
++	${BSD_INSTALL_PROGRAM}  optimize.x   $(BINDIR)/optimize
++	${BSD_INSTALL_PROGRAM}  optirot.x    $(BINDIR)/optirot
++	${BSD_INSTALL_PROGRAM}  optrigid.x   $(BINDIR)/optrigid
++	${BSD_INSTALL_PROGRAM}  path.x       $(BINDIR)/path
++	${BSD_INSTALL_PROGRAM}  pdbxyz.x     $(BINDIR)/pdbxyz
++	${BSD_INSTALL_PROGRAM}  polarize.x   $(BINDIR)/polarize
++	${BSD_INSTALL_PROGRAM}  poledit.x    $(BINDIR)/poledit
++	${BSD_INSTALL_PROGRAM}  potential.x  $(BINDIR)/potential
++	${BSD_INSTALL_PROGRAM}  prmedit.x    $(BINDIR)/prmedit
++	${BSD_INSTALL_PROGRAM}  protein.x    $(BINDIR)/protein
++	${BSD_INSTALL_PROGRAM}  pss.x        $(BINDIR)/pss
++	${BSD_INSTALL_PROGRAM}  pssrigid.x   $(BINDIR)/pssrigid
++	${BSD_INSTALL_PROGRAM}  pssrot.x     $(BINDIR)/pssrot
++	${BSD_INSTALL_PROGRAM}  radial.x     $(BINDIR)/radial
++	${BSD_INSTALL_PROGRAM}  saddle.x     $(BINDIR)/saddle
++	${BSD_INSTALL_PROGRAM}  scan.x       $(BINDIR)/scan
++	${BSD_INSTALL_PROGRAM}  sniffer.x    $(BINDIR)/sniffer
++	${BSD_INSTALL_PROGRAM}  spacefill.x  $(BINDIR)/spacefill
++	${BSD_INSTALL_PROGRAM}  spectrum.x   $(BINDIR)/spectrum
++	${BSD_INSTALL_PROGRAM}  superpose.x  $(BINDIR)/superpose
++	${BSD_INSTALL_PROGRAM}  testgrad.x   $(BINDIR)/testgrad
++	${BSD_INSTALL_PROGRAM}  testhess.x   $(BINDIR)/testhess
++	${BSD_INSTALL_PROGRAM}  testpair.x   $(BINDIR)/testpair
++	${BSD_INSTALL_PROGRAM}  testpol.x    $(BINDIR)/testpol
++	${BSD_INSTALL_PROGRAM}  testrot.x    $(BINDIR)/testrot
++	${BSD_INSTALL_PROGRAM}  timer.x      $(BINDIR)/timer
++	${BSD_INSTALL_PROGRAM}  timerot.x    $(BINDIR)/timerot
++	${BSD_INSTALL_PROGRAM}  torsfit.x    $(BINDIR)/torsfit
++	${BSD_INSTALL_PROGRAM}  valence.x    $(BINDIR)/valence
++	${BSD_INSTALL_PROGRAM}  vibbig.x     $(BINDIR)/vibbig
++	${BSD_INSTALL_PROGRAM}  vibrate.x    $(BINDIR)/vibrate
++	${BSD_INSTALL_PROGRAM}  vibrot.x     $(BINDIR)/vibrot
++	${BSD_INSTALL_PROGRAM}  xtalfit.x    $(BINDIR)/xtalfit
++	${BSD_INSTALL_PROGRAM}  xtalmin.x    $(BINDIR)/xtalmin
++	${BSD_INSTALL_PROGRAM}  xyzedit.x    $(BINDIR)/xyzedit
++	${BSD_INSTALL_PROGRAM}  xyzint.x     $(BINDIR)/xyzint
++	${BSD_INSTALL_PROGRAM}  xyzmol2.x    $(BINDIR)/xyzmol2
++	${BSD_INSTALL_PROGRAM}  xyzpdb.x     $(BINDIR)/xyzpdb
+ 
+ rename_exe:
+-	mv  alchemy.x    $(BINDIR)/alchemy.exe
+-	mv  analyze.x    $(BINDIR)/analyze.exe
+-	mv  anneal.x     $(BINDIR)/anneal.exe
+-	mv  archive.x    $(BINDIR)/archive.exe
+-	mv  bar.x        $(BINDIR)/bar.exe
+-	mv  correlate.x  $(BINDIR)/correlate.exe
+-	mv  crystal.x    $(BINDIR)/crystal.exe
+-	mv  diffuse.x    $(BINDIR)/diffuse.exe
+-	mv  distgeom.x   $(BINDIR)/distgeom.exe
+-	mv  document.x   $(BINDIR)/document.exe
+-	mv  dynamic.x    $(BINDIR)/dynamic.exe
+-	mv  gda.x        $(BINDIR)/gda.exe
+-	mv  intedit.x    $(BINDIR)/intedit.exe
+-	mv  intxyz.x     $(BINDIR)/intxyz.exe
+-	mv  minimize.x   $(BINDIR)/minimize.exe
+-	mv  minirot.x    $(BINDIR)/minirot.exe
+-	mv  minrigid.x   $(BINDIR)/minrigid.exe
+-	mv  mol2xyz.x    $(BINDIR)/mol2xyz.exe
+-	mv  molxyz.x     $(BINDIR)/molxyz.exe
+-	mv  monte.x      $(BINDIR)/monte.exe
+-	mv  newton.x     $(BINDIR)/newton.exe
+-	mv  newtrot.x    $(BINDIR)/newtrot.exe
+-	mv  nucleic.x    $(BINDIR)/nucleic.exe
+-	mv  optimize.x   $(BINDIR)/optimize.exe
+-	mv  optirot.x    $(BINDIR)/optirot.exe
+-	mv  optrigid.x   $(BINDIR)/optrigid.exe
+-	mv  path.x       $(BINDIR)/path.exe
+-	mv  pdbxyz.x     $(BINDIR)/pdbxyz.exe
+-	mv  polarize.x   $(BINDIR)/polarize.exe
+-	mv  poledit.x    $(BINDIR)/poledit.exe
+-	mv  potential.x  $(BINDIR)/potential.exe
+-	mv  prmedit.x    $(BINDIR)/prmedit.exe
+-	mv  protein.x    $(BINDIR)/protein.exe
+-	mv  pss.x        $(BINDIR)/pss.exe
+-	mv  pssrigid.x   $(BINDIR)/pssrigid.exe
+-	mv  pssrot.x     $(BINDIR)/pssrot.exe
+-	mv  radial.x     $(BINDIR)/radial.exe
+-	mv  saddle.x     $(BINDIR)/saddle.exe
+-	mv  scan.x       $(BINDIR)/scan.exe
+-	mv  sniffer.x    $(BINDIR)/sniffer.exe
+-	mv  spacefill.x  $(BINDIR)/spacefill.exe
+-	mv  spectrum.x   $(BINDIR)/spectrum.exe
+-	mv  superpose.x  $(BINDIR)/superpose.exe
+-	mv  testgrad.x   $(BINDIR)/testgrad.exe
+-	mv  testhess.x   $(BINDIR)/testhess.exe
+-	mv  testpair.x   $(BINDIR)/testpair.exe
+-	mv  testpol.x    $(BINDIR)/testpol.exe
+-	mv  testrot.x    $(BINDIR)/testrot.exe
+-	mv  timer.x      $(BINDIR)/timer.exe
+-	mv  timerot.x    $(BINDIR)/timerot.exe
+-	mv  torsfit.x    $(BINDIR)/torsfit.exe
+-	mv  valence.x    $(BINDIR)/valence.exe
+-	mv  vibbig.x     $(BINDIR)/vibbig.exe
+-	mv  vibrate.x    $(BINDIR)/vibrate.exe
+-	mv  vibrot.x     $(BINDIR)/vibrot.exe
+-	mv  xtalfit.x    $(BINDIR)/xtalfit.exe
+-	mv  xtalmin.x    $(BINDIR)/xtalmin.exe
+-	mv  xyzedit.x    $(BINDIR)/xyzedit.exe
+-	mv  xyzint.x     $(BINDIR)/xyzint.exe
+-	mv  xyzmol2.x    $(BINDIR)/xyzmol2.exe
+-	mv  xyzpdb.x     $(BINDIR)/xyzpdb.exe
++	${BSD_INSTALL_PROGRAM}  alchemy.x    $(BINDIR)/alchemy.exe
++	${BSD_INSTALL_PROGRAM}  analyze.x    $(BINDIR)/analyze.exe
++	${BSD_INSTALL_PROGRAM}  anneal.x     $(BINDIR)/anneal.exe
++	${BSD_INSTALL_PROGRAM}  archive.x    $(BINDIR)/archive.exe
++	${BSD_INSTALL_PROGRAM}  bar.x        $(BINDIR)/bar.exe
++	${BSD_INSTALL_PROGRAM}  correlate.x  $(BINDIR)/correlate.exe
++	${BSD_INSTALL_PROGRAM}  crystal.x    $(BINDIR)/crystal.exe
++	${BSD_INSTALL_PROGRAM}  diffuse.x    $(BINDIR)/diffuse.exe
++	${BSD_INSTALL_PROGRAM}  distgeom.x   $(BINDIR)/distgeom.exe
++	${BSD_INSTALL_PROGRAM}  document.x   $(BINDIR)/document.exe
++	${BSD_INSTALL_PROGRAM}  dynamic.x    $(BINDIR)/dynamic.exe
++	${BSD_INSTALL_PROGRAM}  gda.x        $(BINDIR)/gda.exe
++	${BSD_INSTALL_PROGRAM}  intedit.x    $(BINDIR)/intedit.exe
++	${BSD_INSTALL_PROGRAM}  intxyz.x     $(BINDIR)/intxyz.exe
++	${BSD_INSTALL_PROGRAM}  minimize.x   $(BINDIR)/minimize.exe
++	${BSD_INSTALL_PROGRAM}  minirot.x    $(BINDIR)/minirot.exe
++	${BSD_INSTALL_PROGRAM}  minrigid.x   $(BINDIR)/minrigid.exe
++	${BSD_INSTALL_PROGRAM}  mol2xyz.x    $(BINDIR)/mol2xyz.exe
++	${BSD_INSTALL_PROGRAM}  molxyz.x     $(BINDIR)/molxyz.exe
++	${BSD_INSTALL_PROGRAM}  monte.x      $(BINDIR)/monte.exe
++	${BSD_INSTALL_PROGRAM}  newton.x     $(BINDIR)/newton.exe
++	${BSD_INSTALL_PROGRAM}  newtrot.x    $(BINDIR)/newtrot.exe
++	${BSD_INSTALL_PROGRAM}  nucleic.x    $(BINDIR)/nucleic.exe
++	${BSD_INSTALL_PROGRAM}  optimize.x   $(BINDIR)/optimize.exe
++	${BSD_INSTALL_PROGRAM}  optirot.x    $(BINDIR)/optirot.exe
++	${BSD_INSTALL_PROGRAM}  optrigid.x   $(BINDIR)/optrigid.exe
++	${BSD_INSTALL_PROGRAM}  path.x       $(BINDIR)/path.exe
++	${BSD_INSTALL_PROGRAM}  pdbxyz.x     $(BINDIR)/pdbxyz.exe
++	${BSD_INSTALL_PROGRAM}  polarize.x   $(BINDIR)/polarize.exe
++	${BSD_INSTALL_PROGRAM}  poledit.x    $(BINDIR)/poledit.exe
++	${BSD_INSTALL_PROGRAM}  potential.x  $(BINDIR)/potential.exe
++	${BSD_INSTALL_PROGRAM}  prmedit.x    $(BINDIR)/prmedit.exe
++	${BSD_INSTALL_PROGRAM}  protein.x    $(BINDIR)/protein.exe
++	${BSD_INSTALL_PROGRAM}  pss.x        $(BINDIR)/pss.exe
++	${BSD_INSTALL_PROGRAM}  pssrigid.x   $(BINDIR)/pssrigid.exe
++	${BSD_INSTALL_PROGRAM}  pssrot.x     $(BINDIR)/pssrot.exe
++	${BSD_INSTALL_PROGRAM}  radial.x     $(BINDIR)/radial.exe
++	${BSD_INSTALL_PROGRAM}  saddle.x     $(BINDIR)/saddle.exe
++	${BSD_INSTALL_PROGRAM}  scan.x       $(BINDIR)/scan.exe
++	${BSD_INSTALL_PROGRAM}  sniffer.x    $(BINDIR)/sniffer.exe
++	${BSD_INSTALL_PROGRAM}  spacefill.x  $(BINDIR)/spacefill.exe
++	${BSD_INSTALL_PROGRAM}  spectrum.x   $(BINDIR)/spectrum.exe
++	${BSD_INSTALL_PROGRAM}  superpose.x  $(BINDIR)/superpose.exe
++	${BSD_INSTALL_PROGRAM}  testgrad.x   $(BINDIR)/testgrad.exe
++	${BSD_INSTALL_PROGRAM}  testhess.x   $(BINDIR)/testhess.exe
++	${BSD_INSTALL_PROGRAM}  testpair.x   $(BINDIR)/testpair.exe
++	${BSD_INSTALL_PROGRAM}  testpol.x    $(BINDIR)/testpol.exe
++	${BSD_INSTALL_PROGRAM}  testrot.x    $(BINDIR)/testrot.exe
++	${BSD_INSTALL_PROGRAM}  timer.x      $(BINDIR)/timer.exe
++	${BSD_INSTALL_PROGRAM}  timerot.x    $(BINDIR)/timerot.exe
++	${BSD_INSTALL_PROGRAM}  torsfit.x    $(BINDIR)/torsfit.exe
++	${BSD_INSTALL_PROGRAM}  valence.x    $(BINDIR)/valence.exe
++	${BSD_INSTALL_PROGRAM}  vibbig.x     $(BINDIR)/vibbig.exe
++	${BSD_INSTALL_PROGRAM}  vibrate.x    $(BINDIR)/vibrate.exe
++	${BSD_INSTALL_PROGRAM}  vibrot.x     $(BINDIR)/vibrot.exe
++	${BSD_INSTALL_PROGRAM}  xtalfit.x    $(BINDIR)/xtalfit.exe
++	${BSD_INSTALL_PROGRAM}  xtalmin.x    $(BINDIR)/xtalmin.exe
++	${BSD_INSTALL_PROGRAM}  xyzedit.x    $(BINDIR)/xyzedit.exe
++	${BSD_INSTALL_PROGRAM}  xyzint.x     $(BINDIR)/xyzint.exe
++	${BSD_INSTALL_PROGRAM}  xyzmol2.x    $(BINDIR)/xyzmol2.exe
++	${BSD_INSTALL_PROGRAM}  xyzpdb.x     $(BINDIR)/xyzpdb.exe
+ 
+ remove_links:
+ 	rm -f $(LINKDIR)/alchemy
diff --git a/science/tinker/files/patch-source_openend.f b/science/tinker/files/patch-source_openend.f
new file mode 100644
index 000000000000..cecce208672f
--- /dev/null
+++ b/science/tinker/files/patch-source_openend.f
@@ -0,0 +1,16 @@
+--- source/openend.f.orig	Fri Apr 18 13:31:51 2003
++++ source/openend.f	Mon Jul 21 13:36:11 2003
+@@ -29,11 +29,11 @@
+ c
+ c     standard Fortran 90, unavailable in some Fortran 77 compilers
+ c
+-      open (unit=iunit,file=name,status='old',position='append')
++c     open (unit=iunit,file=name,status='old',position='append')
+ c
+ c     common extension supported by many Fortran 77 compilers
+ c
+-c     open (unit=iunit,file=name,status='old',access='append')
++      open (unit=iunit,file=name,status='old',access='append')
+ c
+ c     some Fortran 77 compilers open files for append by default
+ c
diff --git a/science/tinker/files/pkg-message.in b/science/tinker/files/pkg-message.in
new file mode 100644
index 000000000000..58158ef0e8ac
--- /dev/null
+++ b/science/tinker/files/pkg-message.in
@@ -0,0 +1,11 @@
+**********************************************************
+   The author requests that you return a license form
+   to him if you find Tinker to be useful.
+
+   See %%PREFIX%%/share/licenses for license forms.
+
+   The name of TINKER's 'analyze' program has been changed
+   to 'analyze_t' during installation to allow for use on
+   systems where the very common hunspell package is
+   installed as well.
+**********************************************************
diff --git a/science/tinker/pkg-descr b/science/tinker/pkg-descr
new file mode 100644
index 000000000000..0f2cc29dedd0
--- /dev/null
+++ b/science/tinker/pkg-descr
@@ -0,0 +1,16 @@
+Tinker is a set of small programs for doing general purpose molecular
+modeling calculations. Tools are included for energy minimizations,
+geometry calculations, simulated annealing, molecular dynamics, and
+molecular analysis calculations. Tools for converting coordinate sets
+are also provided.  Tinker employs several force fields and minimization
+techniques.
+
+This port sets the maxatm value to 2500 atoms.  This should be
+sufficient for most molecular systems.  Should you need to work with
+larger systems you can set the maxatm parameter in the sizes.i file
+located in the tinker/source directory and recompile.  Note that if it
+is set too large that tinker programs will abort and core dump.
+
+For more information about Tinker see:
+
+WWW: https://dasher.wustl.edu/tinker/
diff --git a/science/tinker/pkg-plist b/science/tinker/pkg-plist
new file mode 100644
index 000000000000..37d34dca21b1
--- /dev/null
+++ b/science/tinker/pkg-plist
@@ -0,0 +1,186 @@
+bin/alchemy
+bin/analyze
+bin/anneal
+bin/archive
+bin/bar
+bin/correlate
+bin/crystal
+bin/diffuse
+bin/distgeom
+bin/document
+bin/dynamic
+bin/gda
+bin/intedit
+bin/intxyz
+bin/minimize
+bin/minirot
+bin/minrigid
+bin/mol2xyz
+bin/molxyz
+bin/monte
+bin/newton
+bin/newtrot
+bin/nucleic
+bin/optimize
+bin/optirot
+bin/optrigid
+bin/path
+bin/pdbxyz
+bin/polarize
+bin/poledit
+bin/potential
+bin/prmedit
+bin/protein
+bin/pss
+bin/pssrigid
+bin/pssrot
+bin/radial
+bin/saddle
+bin/scan
+bin/sniffer
+bin/spacefill
+bin/spectrum
+bin/superpose
+bin/testgrad
+bin/testhess
+bin/testpair
+bin/testpol
+bin/testrot
+bin/timer
+bin/timerot
+bin/torsfit
+bin/valence
+bin/vibbig
+bin/vibrate
+bin/vibrot
+bin/xtalfit
+bin/xtalmin
+bin/xyzedit
+bin/xyzint
+bin/xyzmol2
+bin/xyzpdb
+%%DATADIR%%/params/0README
+%%DATADIR%%/params/amber94.prm
+%%DATADIR%%/params/amber96.prm
+%%DATADIR%%/params/amber98.prm
+%%DATADIR%%/params/amber99.prm
+%%DATADIR%%/params/amber99sb.prm
+%%DATADIR%%/params/amoeba04.prm
+%%DATADIR%%/params/amoeba09.prm
+%%DATADIR%%/params/amoebabio09.prm
+%%DATADIR%%/params/amoebabio18.prm
+%%DATADIR%%/params/amoebanuc17.prm
+%%DATADIR%%/params/amoebapro04.prm
+%%DATADIR%%/params/amoebapro13.prm
+%%DATADIR%%/params/charmm19.prm
+%%DATADIR%%/params/charmm22.prm
+%%DATADIR%%/params/charmm22cmap.prm
+%%DATADIR%%/params/dang.prm
+%%DATADIR%%/params/hoch.prm
+%%DATADIR%%/params/iwater.prm
+%%DATADIR%%/params/mm2.prm
+%%DATADIR%%/params/mm3.prm
+%%DATADIR%%/params/mm3pro.prm
+%%DATADIR%%/params/mmff.prm
+%%DATADIR%%/params/oplsaa.prm
+%%DATADIR%%/params/oplsaal.prm
+%%DATADIR%%/params/oplsua.prm
+%%DATADIR%%/params/smoothaa.prm
+%%DATADIR%%/params/smoothua.prm
+%%DATADIR%%/params/tiny.prm
+%%DATADIR%%/params/water03.prm
+%%DATADIR%%/params/water14.prm
+%%DATADIR%%/test/0README
+%%DATADIR%%/test/anion.dat
+%%DATADIR%%/test/anion.dyn0
+%%DATADIR%%/test/anion.key
+%%DATADIR%%/test/anion.log
+%%DATADIR%%/test/anion.run
+%%DATADIR%%/test/anion.xyz
+%%DATADIR%%/test/argon.1st
+%%DATADIR%%/test/argon.key
+%%DATADIR%%/test/argon.log
+%%DATADIR%%/test/argon.run
+%%DATADIR%%/test/cluster.dat
+%%DATADIR%%/test/cluster.key
+%%DATADIR%%/test/cluster.log
+%%DATADIR%%/test/cluster.run
+%%DATADIR%%/test/cluster.xyz
+%%DATADIR%%/test/crambin.key
+%%DATADIR%%/test/crambin.log
+%%DATADIR%%/test/crambin.pdb
+%%DATADIR%%/test/crambin.run
+%%DATADIR%%/test/cyclohex.boat
+%%DATADIR%%/test/cyclohex.chair
+%%DATADIR%%/test/cyclohex.key
+%%DATADIR%%/test/cyclohex.log
+%%DATADIR%%/test/cyclohex.run
+%%DATADIR%%/test/dhfr.dyn
+%%DATADIR%%/test/dhfr.key
+%%DATADIR%%/test/dhfr.log
+%%DATADIR%%/test/dhfr.run
+%%DATADIR%%/test/dhfr.xyz
+%%DATADIR%%/test/dialanine.key
+%%DATADIR%%/test/dialanine.log
+%%DATADIR%%/test/dialanine.run
+%%DATADIR%%/test/dialanine.xyz
+%%DATADIR%%/test/enkephalin.dat
+%%DATADIR%%/test/enkephalin.key
+%%DATADIR%%/test/enkephalin.log
+%%DATADIR%%/test/enkephalin.run
+%%DATADIR%%/test/ethanol.000
+%%DATADIR%%/test/ethanol.020
+%%DATADIR%%/test/ethanol.040
+%%DATADIR%%/test/ethanol.060
+%%DATADIR%%/test/ethanol.080
+%%DATADIR%%/test/ethanol.100
+%%DATADIR%%/test/ethanol.120
+%%DATADIR%%/test/ethanol.140
+%%DATADIR%%/test/ethanol.160
+%%DATADIR%%/test/ethanol.180
+%%DATADIR%%/test/ethanol.dat
+%%DATADIR%%/test/ethanol.key
+%%DATADIR%%/test/ethanol.log
+%%DATADIR%%/test/ethanol.run
+%%DATADIR%%/test/ethanol.xyz
+%%DATADIR%%/test/formamide.cell
+%%DATADIR%%/test/formamide.dat
+%%DATADIR%%/test/formamide.key
+%%DATADIR%%/test/formamide.log
+%%DATADIR%%/test/formamide.run
+%%DATADIR%%/test/gpcr.blk
+%%DATADIR%%/test/gpcr.key
+%%DATADIR%%/test/gpcr.log
+%%DATADIR%%/test/gpcr.run
+%%DATADIR%%/test/gpcr.xyz
+%%DATADIR%%/test/helix.1st
+%%DATADIR%%/test/helix.key
+%%DATADIR%%/test/helix.log
+%%DATADIR%%/test/helix.run
+%%DATADIR%%/test/ice.key
+%%DATADIR%%/test/ice.log
+%%DATADIR%%/test/ice.run
+%%DATADIR%%/test/ice.xyz
+%%DATADIR%%/test/ifabp.dat
+%%DATADIR%%/test/ifabp.key
+%%DATADIR%%/test/ifabp.log
+%%DATADIR%%/test/ifabp.run
+%%DATADIR%%/test/ifabp.xyz
+%%DATADIR%%/test/nitrogen.arc
+%%DATADIR%%/test/nitrogen.key
+%%DATADIR%%/test/nitrogen.log
+%%DATADIR%%/test/nitrogen.run
+%%DATADIR%%/test/nitrogen.xyz
+%%DATADIR%%/test/salt.cell
+%%DATADIR%%/test/salt.key
+%%DATADIR%%/test/salt.log
+%%DATADIR%%/test/salt.run
+%%DATADIR%%/test/tetraala.dat
+%%DATADIR%%/test/tetraala.key
+%%DATADIR%%/test/tetraala.log
+%%DATADIR%%/test/tetraala.run
+%%DATADIR%%/test/water.key
+%%DATADIR%%/test/water.log
+%%DATADIR%%/test/water.pot
+%%DATADIR%%/test/water.run
+%%DATADIR%%/test/water.xyz