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-rw-r--r--biology/blast/pkg-plist209
1 files changed, 209 insertions, 0 deletions
diff --git a/biology/blast/pkg-plist b/biology/blast/pkg-plist
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index 000000000000..f2cd7d967d37
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@@ -0,0 +1,209 @@
+bin/blasta
+bin/gb2fasta
+bin/gt2fasta
+bin/memfile
+bin/nrdb
+bin/pam
+bin/patdb
+bin/pir2fasta
+bin/sp2fasta
+bin/xdformat
+bin/xdget
+bin/wu-blastall
+bin/wu-formatdb
+bin/blastn
+bin/blastp
+bin/blastx
+bin/tblastn
+bin/tblastx
+bin/setdb
+bin/pressdb
+%%DATADIR%%/matrix/aa/nuc.4.4
+%%DATADIR%%/matrix/aa/BLOSUM30
+%%DATADIR%%/matrix/aa/BLOSUM35
+%%DATADIR%%/matrix/aa/BLOSUM40
+%%DATADIR%%/matrix/aa/BLOSUM45
+%%DATADIR%%/matrix/aa/BLOSUM50
+%%DATADIR%%/matrix/aa/BLOSUM55
+%%DATADIR%%/matrix/aa/BLOSUM60
+%%DATADIR%%/matrix/aa/BLOSUM62
+%%DATADIR%%/matrix/aa/BLOSUM65
+%%DATADIR%%/matrix/aa/BLOSUM70
+%%DATADIR%%/matrix/aa/BLOSUM75
+%%DATADIR%%/matrix/aa/BLOSUM80
+%%DATADIR%%/matrix/aa/BLOSUM85
+%%DATADIR%%/matrix/aa/BLOSUM90
+%%DATADIR%%/matrix/aa/BLOSUMN
+%%DATADIR%%/matrix/aa/blosum100
+%%DATADIR%%/matrix/aa/blosum30
+%%DATADIR%%/matrix/aa/blosum35
+%%DATADIR%%/matrix/aa/blosum40
+%%DATADIR%%/matrix/aa/blosum45
+%%DATADIR%%/matrix/aa/blosum50
+%%DATADIR%%/matrix/aa/blosum55
+%%DATADIR%%/matrix/aa/blosum60
+%%DATADIR%%/matrix/aa/blosumn
+%%DATADIR%%/matrix/aa/blosum62
+%%DATADIR%%/matrix/aa/blosum65
+%%DATADIR%%/matrix/aa/blosum70
+%%DATADIR%%/matrix/aa/blosum75
+%%DATADIR%%/matrix/aa/blosum80
+%%DATADIR%%/matrix/aa/blosum85
+%%DATADIR%%/matrix/aa/DAYHOFF
+%%DATADIR%%/matrix/aa/GONNET
+%%DATADIR%%/matrix/aa/IDENTITY
+%%DATADIR%%/matrix/aa/MATCH
+%%DATADIR%%/matrix/aa/PAM10
+%%DATADIR%%/matrix/aa/NUC.4.2
+%%DATADIR%%/matrix/aa/NUC.4.4
+%%DATADIR%%/matrix/aa/PAM100
+%%DATADIR%%/matrix/aa/PAM110
+%%DATADIR%%/matrix/aa/PAM120
+%%DATADIR%%/matrix/aa/PAM130
+%%DATADIR%%/matrix/aa/PAM120.cdi
+%%DATADIR%%/matrix/aa/PAM140
+%%DATADIR%%/matrix/aa/PAM150
+%%DATADIR%%/matrix/aa/PAM160
+%%DATADIR%%/matrix/aa/PAM170
+%%DATADIR%%/matrix/aa/PAM160.cdi
+%%DATADIR%%/matrix/aa/PAM180
+%%DATADIR%%/matrix/aa/PAM190
+%%DATADIR%%/matrix/aa/PAM20
+%%DATADIR%%/matrix/aa/PAM200
+%%DATADIR%%/matrix/aa/PAM200.cdi
+%%DATADIR%%/matrix/aa/PAM210
+%%DATADIR%%/matrix/aa/PAM220
+%%DATADIR%%/matrix/aa/PAM230
+%%DATADIR%%/matrix/aa/PAM240
+%%DATADIR%%/matrix/aa/PAM250
+%%DATADIR%%/matrix/aa/PAM250.cdi
+%%DATADIR%%/matrix/aa/PAM260
+%%DATADIR%%/matrix/aa/PAM270
+%%DATADIR%%/matrix/aa/PAM280
+%%DATADIR%%/matrix/aa/PAM290
+%%DATADIR%%/matrix/aa/PAM30
+%%DATADIR%%/matrix/aa/PAM300
+%%DATADIR%%/matrix/aa/PAM310
+%%DATADIR%%/matrix/aa/PAM320
+%%DATADIR%%/matrix/aa/PAM330
+%%DATADIR%%/matrix/aa/PAM340
+%%DATADIR%%/matrix/aa/PAM350
+%%DATADIR%%/matrix/aa/PAM360
+%%DATADIR%%/matrix/aa/PAM370
+%%DATADIR%%/matrix/aa/PAM380
+%%DATADIR%%/matrix/aa/PAM390
+%%DATADIR%%/matrix/aa/PAM40
+%%DATADIR%%/matrix/aa/PAM40.cdi
+%%DATADIR%%/matrix/aa/PAM400
+%%DATADIR%%/matrix/aa/PAM410
+%%DATADIR%%/matrix/aa/PAM420
+%%DATADIR%%/matrix/aa/PAM430
+%%DATADIR%%/matrix/aa/PAM440
+%%DATADIR%%/matrix/aa/PAM450
+%%DATADIR%%/matrix/aa/PAM460
+%%DATADIR%%/matrix/aa/PAM470
+%%DATADIR%%/matrix/aa/PAM480
+%%DATADIR%%/matrix/aa/PAM490
+%%DATADIR%%/matrix/aa/PAM50
+%%DATADIR%%/matrix/aa/PAM500
+%%DATADIR%%/matrix/aa/PAM60
+%%DATADIR%%/matrix/aa/PAM70
+%%DATADIR%%/matrix/aa/PAM80
+%%DATADIR%%/matrix/aa/PAM80.cdi
+%%DATADIR%%/matrix/aa/PAM90
+%%DATADIR%%/matrix/aa/blosum90
+%%DATADIR%%/matrix/aa/pam120.cdi
+%%DATADIR%%/matrix/aa/pam160.cdi
+%%DATADIR%%/matrix/aa/dayhoff
+%%DATADIR%%/matrix/aa/gonnet
+%%DATADIR%%/matrix/aa/identity
+%%DATADIR%%/matrix/aa/match
+%%DATADIR%%/matrix/aa/pam10
+%%DATADIR%%/matrix/aa/pam100
+%%DATADIR%%/matrix/aa/pam110
+%%DATADIR%%/matrix/aa/pam120
+%%DATADIR%%/matrix/aa/pam130
+%%DATADIR%%/matrix/aa/pam140
+%%DATADIR%%/matrix/aa/pam150
+%%DATADIR%%/matrix/aa/pam160
+%%DATADIR%%/matrix/aa/pam170
+%%DATADIR%%/matrix/aa/pam180
+%%DATADIR%%/matrix/aa/pam190
+%%DATADIR%%/matrix/aa/pam20
+%%DATADIR%%/matrix/aa/pam200
+%%DATADIR%%/matrix/aa/pam250.cdi
+%%DATADIR%%/matrix/aa/pam210
+%%DATADIR%%/matrix/aa/pam220
+%%DATADIR%%/matrix/aa/pam230
+%%DATADIR%%/matrix/aa/pam240
+%%DATADIR%%/matrix/aa/pam250
+%%DATADIR%%/matrix/aa/pam40.cdi
+%%DATADIR%%/matrix/aa/pam260
+%%DATADIR%%/matrix/aa/pam270
+%%DATADIR%%/matrix/aa/pam280
+%%DATADIR%%/matrix/aa/pam290
+%%DATADIR%%/matrix/aa/pam30
+%%DATADIR%%/matrix/aa/pam300
+%%DATADIR%%/matrix/aa/pam310
+%%DATADIR%%/matrix/aa/pam320
+%%DATADIR%%/matrix/aa/pam330
+%%DATADIR%%/matrix/aa/pam340
+%%DATADIR%%/matrix/aa/pam350
+%%DATADIR%%/matrix/aa/pam360
+%%DATADIR%%/matrix/aa/pam370
+%%DATADIR%%/matrix/aa/pam380
+%%DATADIR%%/matrix/aa/pam390
+%%DATADIR%%/matrix/aa/pam40
+%%DATADIR%%/matrix/aa/pam80.cdi
+%%DATADIR%%/matrix/aa/pam400
+%%DATADIR%%/matrix/aa/pam410
+%%DATADIR%%/matrix/aa/pam420
+%%DATADIR%%/matrix/aa/pam430
+%%DATADIR%%/matrix/aa/pam440
+%%DATADIR%%/matrix/aa/pam450
+%%DATADIR%%/matrix/aa/pam460
+%%DATADIR%%/matrix/aa/pam470
+%%DATADIR%%/matrix/aa/pam480
+%%DATADIR%%/matrix/aa/pam490
+%%DATADIR%%/matrix/aa/pam50
+%%DATADIR%%/matrix/aa/pam500
+%%DATADIR%%/matrix/aa/pam60
+%%DATADIR%%/matrix/aa/pam70
+%%DATADIR%%/matrix/aa/pam80
+%%DATADIR%%/matrix/aa/pam90
+%%DATADIR%%/matrix/aa/pam200.cdi
+%%DATADIR%%/matrix/aa/PHAT_T70_B66
+%%DATADIR%%/matrix/aa/PHAT_T75_B73
+%%DATADIR%%/matrix/aa/PHAT_T80_B78
+%%DATADIR%%/matrix/aa/PHAT_T85_B82
+%%DATADIR%%/matrix/aa/phat_t70_b66
+%%DATADIR%%/matrix/aa/phat_t75_b73
+%%DATADIR%%/matrix/aa/phat_t80_b78
+%%DATADIR%%/matrix/aa/phat_t85_b82
+%%DATADIR%%/matrix/aa/nuc.4.2
+%%DATADIR%%/matrix/aa/BLOSUM100
+%%DATADIR%%/matrix/nt/PUPY.4.4
+%%DATADIR%%/matrix/nt/IDENTITY.4.2
+%%DATADIR%%/matrix/nt/IDENTITY.4.4
+%%DATADIR%%/matrix/nt/identity.4.2
+%%DATADIR%%/matrix/nt/pupy.4.2
+%%DATADIR%%/matrix/nt/pupy.4.4
+%%DATADIR%%/matrix/nt/PUPY.4.2
+%%DATADIR%%/matrix/nt/identity.4.4
+%%DATADIR%%/matrix/README
+%%DATADIR%%/filter/seg
+%%DATADIR%%/filter/seg+xnu
+%%DATADIR%%/filter/xnu+seg
+%%DATADIR%%/filter/nseg
+%%DATADIR%%/filter/dust
+%%DATADIR%%/filter/nmerge
+%%DATADIR%%/filter/xnu
+%%DATADIR%%/filter/pmerge
+%%DATADIR%%/filter/pseg
+%%DATADIR%%/filter/README
+%%DATADIR%%/sysblast.sample
+@dirrm %%DATADIR%%/matrix/aa
+@dirrm %%DATADIR%%/matrix/nt
+@dirrm %%DATADIR%%/matrix
+@dirrm %%DATADIR%%/filter
+@dirrm %%DATADIR%%