diff options
Diffstat (limited to 'biology/bowtie2/Makefile')
| -rw-r--r-- | biology/bowtie2/Makefile | 26 |
1 files changed, 17 insertions, 9 deletions
diff --git a/biology/bowtie2/Makefile b/biology/bowtie2/Makefile index 0f72c9de9c65..74a60bea3624 100644 --- a/biology/bowtie2/Makefile +++ b/biology/bowtie2/Makefile @@ -1,10 +1,9 @@ # $FreeBSD$ -PORTNAME= bowtie2 -PORTVERSION= 2.3.3.1 +PORTNAME= bowtie2 DISTVERSIONPREFIX= v -PORTREVISION= 2 -CATEGORIES= biology +DISTVERSION= 2.3.5 +CATEGORIES= biology perl5 python MAINTAINER= jwb@FreeBSD.org COMMENT= Ultrafast, memory-efficient short read aligner @@ -13,20 +12,28 @@ LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/LICENSE # May also work on other 64-bit platforms, but untested -ONLY_FOR_ARCHS= amd64 +ONLY_FOR_ARCHS= aarch64 amd64 LIB_DEPENDS= libtbb.so:devel/tbb -USES= gmake perl5 python shebangfix +USES= gmake localbase:ldflags perl5 python shebangfix USE_PERL5= run -SHEBANG_FILES= bowtie2-build bowtie2-inspect scripts/*.pl - USE_GITHUB= yes + +SHEBANG_FILES= bowtie2 bowtie2-build bowtie2-inspect scripts/*.pl GH_ACCOUNT= BenLangmead OPTIONS_DEFINE= DOCS EXAMPLES +SUB_FILES= bowtie2-test + +pre-configure: + @${REINPLACE_CMD} \ + -e 's|^RELEASE_FLAGS|# RELEASE_FLAGS|' \ + -e 's|tbbmalloc_proxy|tbbmalloc|' \ + ${WRKSRC}/Makefile + post-install: - ${MKDIR} ${STAGEDIR}${DATADIR}/scripts + @${MKDIR} ${STAGEDIR}${DATADIR}/scripts ${INSTALL_PROGRAM} \ ${WRKSRC}/bowtie2*-s \ ${WRKSRC}/bowtie2*-l \ @@ -35,6 +42,7 @@ post-install: ${WRKSRC}/scripts/*.sh \ ${WRKSRC}/scripts/*.pl \ ${STAGEDIR}${DATADIR}/scripts + ${INSTALL_SCRIPT} ${WRKDIR}/bowtie2-test ${STAGEDIR}${PREFIX}/bin post-install-DOCS-on: (cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) |