diff options
Diffstat (limited to 'biology/hyphy/files/patch-src_core_matrix.cpp')
| -rw-r--r-- | biology/hyphy/files/patch-src_core_matrix.cpp | 106 |
1 files changed, 106 insertions, 0 deletions
diff --git a/biology/hyphy/files/patch-src_core_matrix.cpp b/biology/hyphy/files/patch-src_core_matrix.cpp new file mode 100644 index 000000000000..0d5720b2751b --- /dev/null +++ b/biology/hyphy/files/patch-src_core_matrix.cpp @@ -0,0 +1,106 @@ +--- src/core/matrix.cpp.orig 2022-02-21 19:46:34 UTC ++++ src/core/matrix.cpp +@@ -3391,7 +3391,6 @@ void _Matrix::AddMatrix (_Matrix& storage, _Matrix + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + #pragma GCC ivdep + #pragma ivdep + for (long idx = 0; idx < upto; idx+=16) { +@@ -3410,7 +3409,6 @@ void _Matrix::AddMatrix (_Matrix& storage, _Matrix + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + #pragma GCC ivdep + #pragma ivdep + for (long idx = 0; idx < upto; idx+=8) { +@@ -3440,7 +3438,6 @@ void _Matrix::AddMatrix (_Matrix& storage, _Matrix + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + for (long idx = 0; idx < upto; idx+=16) { + CELL_OP (idx); + CELL_OP (idx+4); +@@ -3454,7 +3451,6 @@ void _Matrix::AddMatrix (_Matrix& storage, _Matrix + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + #pragma GCC ivdep + #pragma ivdep + for (long idx = 0; idx < upto; idx+=8) { +@@ -3895,7 +3891,6 @@ void _Matrix::Multiply (_Matrix& storage, _Matrix + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + for (long k = 0; k < vDim; k+=4) { + __m256d D4, B4; + DO_GROUP_OP (D4, B4, k); +@@ -3946,7 +3941,6 @@ void _Matrix::Multiply (_Matrix& storage, _Matrix + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + for (long k = 0; k < vDim; k+=2) { + __m128d D4, B4; + DO_GROUP_OP1 (D4, B4, k); +@@ -3998,7 +3992,6 @@ void _Matrix::Multiply (_Matrix& storage, _Matrix + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + for (long k = 0; k < vDim; k+=2) { + float64x2_t D4, B4; + DO_GROUP_OP1 (D4, B4, k); +@@ -4163,7 +4156,6 @@ void _Matrix::Multiply (_Matrix& storage, _Matrix + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + for (long k = 0; k < dimm4; k+=4) { + __m256d D4, B4; + DO_GROUP_OP (D4, B4, k); +@@ -4271,7 +4263,6 @@ void _Matrix::Multiply (_Matrix& storage, _Matrix + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + for (long k = 0; k < dimm4; k+=2) { + __m128d D4, B4; + DO_GROUP_OP1 (D4, B4, k); +@@ -4380,7 +4371,6 @@ void _Matrix::Multiply (_Matrix& storage, _Matrix + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + for (long k = 0; k < dimm4; k+=2) { + float64x2_t D4, B4; + DO_GROUP_OP1 (D4, B4, k); +@@ -4441,7 +4431,6 @@ void _Matrix::Multiply (_Matrix& storage, _Matrix + #pragma GCC unroll 8 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + for (long k = 0, column = j*hDim; k < vDim; k++, column ++) { + resCell += row[k] * secondArg.theData [column]; + } +@@ -5822,7 +5811,6 @@ _Matrix* _Matrix::Exponentiate (hyFloat scale_to, b + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + for (long c = from; c < compressedIndex[r]; c++, i++) { + theIndex[i] = compressedIndex[c+hDim] * vDim + r; + } +@@ -6988,7 +6976,6 @@ hyFloat _Matrix::Sqr (hyFloat* _hprestrict_ sta + #pragma GCC unroll 4 + #pragma clang loop vectorize(enable) + #pragma clang loop interleave(enable) +- #pragma clang loop unroll(enable) + #pragma GCC ivdep + #pragma ivdep + for (long k = 0; k < loopBound; k+=4) { |