diff options
Diffstat (limited to 'biology/migrate/files/patch-Makefile.in')
| -rw-r--r-- | biology/migrate/files/patch-Makefile.in | 23 |
1 files changed, 8 insertions, 15 deletions
diff --git a/biology/migrate/files/patch-Makefile.in b/biology/migrate/files/patch-Makefile.in index 814875b4b1a8..0119cb51c758 100644 --- a/biology/migrate/files/patch-Makefile.in +++ b/biology/migrate/files/patch-Makefile.in @@ -1,18 +1,11 @@ ---- Makefile.in.orig 2015-06-24 02:57:05 UTC +--- Makefile.in.orig 2024-03-27 11:13:06 UTC +++ Makefile.in -@@ -89,7 +89,7 @@ PAPERFORMAT = @PAPERFORMAT@ - # -DINTEGRATEDLIKE may be used to get a marginal likelihood different to the current thermodynamic integr and harmonic mean [does not work] - # -UEP calculates unique event polymorphism [not checked in a long time -- most likely does not work] - NEWSTUFF = -DNEXUSTREE --COMMONFLAGS = $(ARCH) $(MACOSVERSION) $(NEWSTUFF) $(HAVE_ZNZ) -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS) -+COMMONFLAGS = $(MACOSVERSION) $(NEWSTUFF) $(HAVE_ZNZ) -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS) +@@ -94,7 +94,7 @@ NEWSTUFF = + # -DTHERMOCHECK prints heated likelihood into mixfile (needs to be added the parmfile) + #NEWSTUFF = -DNEWVERSION + NEWSTUFF = +-COMMONFLAGS = $(ARCH) $(MACOSVERSION) $(NEWSTUFF) $(HAVE_ZNZ) -DNEXUSTREE -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS) ++COMMONFLAGS = $(MACOSVERSION) $(NEWSTUFF) $(HAVE_ZNZ) -DNEXUSTREE -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS) + VALGRINDCOMMONFLAGS = $(ARCH) $(MACOSVERSION) $(NEWSTUFF) $(HAVE_ZNZ) -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) # # combine the common flags with the version number and subversion number - COMMONVFLAGS = $(COMMONFLAGS) -DMIGRATESUBVERSION=\"\\\"$(MIGRATESUBVERSION)\\\"\" -@@ -544,4 +544,4 @@ parallel_short_test:: - #---------------------------------------------------------------- - # BEAGLE - beagle: -- $(MAKE) $(NAME) "CFLAGS = $(DEBUGCFLAGS) $(BEAGLEFLAGS) $(PRETTYCFLAGS)" "LIBS = $(PDFLIB) $(LIBS)" "LDFLAGS =$(LDFLAGS) $(EXCEPTIONS) `pkg-config /Users/beerli/src/beagle-lib/hmsbeagle-1.0.pc --cflags --libs` -framework OpenCL" -\ No newline at end of file -+ $(MAKE) $(NAME) "CFLAGS = $(DEBUGCFLAGS) $(BEAGLEFLAGS) $(PRETTYCFLAGS)" "LIBS = $(PDFLIB) $(LIBS)" "LDFLAGS =$(LDFLAGS) $(EXCEPTIONS) `pkg-config /Users/beerli/src/beagle-lib/hmsbeagle-1.0.pc --cflags --libs` -framework OpenCL" |