diff options
Diffstat (limited to 'biology/nab/files/patch-Makefile')
| -rw-r--r-- | biology/nab/files/patch-Makefile | 59 |
1 files changed, 36 insertions, 23 deletions
diff --git a/biology/nab/files/patch-Makefile b/biology/nab/files/patch-Makefile index d754d329ca56..3fe19a6cd21f 100644 --- a/biology/nab/files/patch-Makefile +++ b/biology/nab/files/patch-Makefile @@ -1,29 +1,49 @@ ---- Makefile.orig Thu Apr 7 20:18:20 2005 -+++ Makefile Mon Apr 25 13:37:39 2005 -@@ -2,42 +2,39 @@ +--- Makefile.orig Mon Aug 21 11:16:05 2006 ++++ Makefile Fri Dec 15 16:06:57 2006 +@@ -2,31 +2,32 @@ include config.h -+all: install test ++all: install + install: -mkdir $(BINDIR) $(LIBDIR) $(INCDIR) -- (cd ucpp-1.3; make install ) +- (cd ucpp-1.3; make $(UCPP) ) - (cd byacc; make install ) -- (cd lapack; make $(LAPACK) ) -- (cd blas; make $(BLAS) ) +- +-# here are the Fortran versions: +-# (cd lapack; make $(LAPACK) ) +-# (cd blas; make $(BLAS) ) +- +-# here are the C versions: +- (cd clapack; make $(LAPACK) ) +- (cd cblas; make $(BLAS) ) +- (cd f2c; make $(F2C) ) +- - (cd cifparse; make install ) - (cd src; make install ) - (cd nss; make install ) - (cd tleap; make install ) -+ (cd lapack; env NABHOME=.. make $(LAPACK) ) -+ (cd blas; env NABHOME=.. make $(BLAS) ) ++ (cd clapack; env NABHOME=.. make $(LAPACK) ) ++ (cd cblas; env NABHOME=.. make $(BLAS) ) ++ (cd f2c; env NABHOME=.. make $(F2C) ) + (cd cifparse; env NABHOME=.. make install ) + (cd src; env NABHOME=.. make install ) + (cd nss; env NABHOME=.. make install ) + (cd tleap; env NABHOME=.. make install ) ++# (cd peptide && \ ++# env NABHOME=.. ../bin/nab $(CFLAGS) -o peptide peptide.nab ) ++# cp -p peptide/README doc/README-peptide ++# mv peptide/peptide bin ++# @echo ++# @echo "Ignore conflicting types warnings" ++# @echo ++# (cd suppose; env NABHOME=.. make all ) ++# cp -p suppose/suppose.1 doc ++# mv suppose/suppose suppose/PCA_suppose bin @echo - @echo "completed installation of NAB version 5" +- @echo "completed installation of NAB version 5" ++ @echo "completed installation of NAB version 5.1" @echo clean: @@ -32,20 +52,13 @@ (cd cifparse; make clean ) (cd src; make clean ) (cd nss; make clean ) - (cd tleap; make clean ) - (cd lapack; make clean ) - (cd blas; make clean ) -- -+ - uninstall: clean -- (cd ucpp-1.3; make uninstall ) - (cd cifparse; make uninstall ) - (cd src; make uninstall ) - (cd nss; make uninstall ) - (cd tleap; make uninstall ) - -/bin/rm config.h - -rm -rf $(BINDIR) $(LIBDIR) $(INCDIR) +@@ -34,10 +35,12 @@ + (cd cblas; make clean ) + (cd clapack; make clean ) + (cd f2c; make clean ) - ++ (cd suppose; make clean ) ++ (cd peptide && rm -f peptide.c peptide ) + # note: "make test" needs to follow "make", since it is very hard to # tell if the compiler is completely "made" or not. |