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Diffstat (limited to 'biology/py-pydeseq2/Makefile')
| -rw-r--r-- | biology/py-pydeseq2/Makefile | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/biology/py-pydeseq2/Makefile b/biology/py-pydeseq2/Makefile new file mode 100644 index 000000000000..79df1d1ad48c --- /dev/null +++ b/biology/py-pydeseq2/Makefile @@ -0,0 +1,26 @@ +PORTNAME= pydeseq2 +DISTVERSION= 0.5.2 +CATEGORIES= biology python +MASTER_SITES= PYPI +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Python implementation of the popular DESeq2 R package +WWW= https://github.com/owkin/PyDESeq2 + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}anndata>=0.8.0:devel/py-anndata@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}formulaic>=1.0.2:math/py-formulaic@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}formulaic_contrasts>=0.2.0:math/py-formulaic-contrasts@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.6.2:math/py-matplotlib@${PY_FLAVOR} \ + ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}pandas>=1.4.0:math/py-pandas@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scikit-learn>=1.1.0:science/py-scikit-learn@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>1.11.0:science/py-scipy@${PY_FLAVOR} + +USES= python +USE_PYTHON= autoplist distutils + +.include <bsd.port.mk> |