1 files changed, 75 insertions, 0 deletions
diff --git a/biology/snpeff/pkg-plist b/biology/snpeff/pkg-plist
new file mode 100644
index 000000000000..a004332b0b41
--- /dev/null
+++ b/biology/snpeff/pkg-plist
@@ -0,0 +1,75 @@
+bin/snpEff
+bin/snpSift
+libexec/snpeff/1kg.sh
+libexec/snpeff/annotate_demo.sh
+libexec/snpeff/annotate_demo_GATK.sh
+libexec/snpeff/bedEffOnePerLine.pl
+libexec/snpeff/buildDbNcbi.sh
+libexec/snpeff/cgShore.pl
+libexec/snpeff/cgShore.sh
+libexec/snpeff/countColumns.py
+libexec/snpeff/db.pl
+libexec/snpeff/extractSequences.pl
+libexec/snpeff/fasta2tab.pl
+libexec/snpeff/fastaSample.pl
+libexec/snpeff/fastaSplit.pl
+libexec/snpeff/fastqSplit.pl
+libexec/snpeff/filterBy.py
+libexec/snpeff/gffRemovePhase.pl
+libexec/snpeff/gsa/bayesFactor_correction_scoreCount.r
+libexec/snpeff/gsa/bayesFactor_correction_scoreCount.sh
+libexec/snpeff/gsa/bayesFactor_correction_scoreCount_max10.sh
+libexec/snpeff/gsa/checkGeneNames.py
+libexec/snpeff/gsa/create_sets.bds
+libexec/snpeff/gsa/geneSetOverlap.py
+libexec/snpeff/gsa/geneSetOverlap.sort.txt
+libexec/snpeff/gsa/geneSetsGtex.py
+libexec/snpeff/gsa/pvalue_correction_scoreCount.r
+libexec/snpeff/gsa/pvalue_correction_scoreCount.sh
+libexec/snpeff/gsa/pvalue_correction_scoreCount_min10.sh
+libexec/snpeff/isutf8.py
+libexec/snpeff/join.pl
+libexec/snpeff/joinSnpEff.pl
+libexec/snpeff/make_and_commit_docs.sh
+libexec/snpeff/make_dbNSFP.sh
+libexec/snpeff/nextProt_filter.pl
+libexec/snpeff/ped2vcf.py
+libexec/snpeff/plot.pl
+libexec/snpeff/plotHistogram.pl
+libexec/snpeff/plotLabel.pl
+libexec/snpeff/plotMA.pl
+libexec/snpeff/plotQQ.pl
+libexec/snpeff/plotQQsubsample.pl
+libexec/snpeff/plotSmoothScatter.pl
+libexec/snpeff/plotXY.pl
+libexec/snpeff/queue.pl
+libexec/snpeff/sam2fastq.pl
+libexec/snpeff/sample.pl
+libexec/snpeff/snpEff
+libexec/snpeff/snpEff.bak
+libexec/snpeff/snpEff.orig
+libexec/snpeff/snpSift
+libexec/snpeff/snpSift.orig
+libexec/snpeff/snpSift_filter_sample_to_number.pl
+libexec/snpeff/sortLine.py
+libexec/snpeff/splitChr.pl
+libexec/snpeff/statsNum.pl
+libexec/snpeff/swapCols.pl
+libexec/snpeff/transpose.pl
+libexec/snpeff/txt2fa.pl
+libexec/snpeff/txt2vcf.py
+libexec/snpeff/uniqCount.pl
+libexec/snpeff/uniqCut.pl
+libexec/snpeff/vcfAnnFirst.py
+libexec/snpeff/vcfBareBones.pl
+libexec/snpeff/vcfEffHighest.ORI.py
+libexec/snpeff/vcfEffOnePerLine.pl
+libexec/snpeff/vcfFilterSamples.pl
+libexec/snpeff/vcfInfoOnePerLine.pl
+libexec/snpeff/vcfOnlyAlts.pl
+libexec/snpeff/vcfReduceGenotypes.pl
+libexec/snpeff/vcfRefCorrect.py
+libexec/snpeff/wigSplit.pl
+%%JAVAJARDIR%%/snpeff/SnpSift.jar
+%%JAVAJARDIR%%/snpeff/snpEff.config
+%%JAVAJARDIR%%/snpeff/snpEff.jar