diff options
Diffstat (limited to 'math')
34 files changed, 169 insertions, 136 deletions
diff --git a/math/R-cran-lava/Makefile b/math/R-cran-lava/Makefile index 31a4b4d93a7c..24c6d6349184 100644 --- a/math/R-cran-lava/Makefile +++ b/math/R-cran-lava/Makefile @@ -1,21 +1,19 @@ PORTNAME= lava -DISTVERSION= 1.8.1 +DISTVERSION= 1.8.2 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} MAINTAINER= eduardo@FreeBSD.org COMMENT= Latent Variable Models -WWW= https://cran.r-project.org/web/packages/lava/ +WWW= https://cran.r-project.org/package=lava LICENSE= GPLv3 -CRAN_DEPENDS= R-cran-cli>0:devel/R-cran-cli \ +RUN_DEPENDS= R-cran-cli>0:devel/R-cran-cli \ R-cran-future.apply>0:devel/R-cran-future.apply \ R-cran-numDeriv>0:math/R-cran-numDeriv \ R-cran-progressr>0:devel/R-cran-progressr \ R-cran-SQUAREM>0:math/R-cran-SQUAREM -BUILD_DEPENDS= ${CRAN_DEPENDS} -RUN_DEPENDS= ${CRAN_DEPENDS} TEST_DEPENDS= R-cran-geepack>0:math/R-cran-geepack \ R-cran-knitr>0:print/R-cran-knitr \ R-cran-rmarkdown>0:textproc/R-cran-rmarkdown \ diff --git a/math/R-cran-lava/distinfo b/math/R-cran-lava/distinfo index 79a476b3e5c8..84f947069ef3 100644 --- a/math/R-cran-lava/distinfo +++ b/math/R-cran-lava/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1736820291 -SHA256 (lava_1.8.1.tar.gz) = 189f6648dad03d18c12202ef19fec3a133e159740fcfc6389383015d4d821382 -SIZE (lava_1.8.1.tar.gz) = 1170679 +TIMESTAMP = 1761921329 +SHA256 (lava_1.8.2.tar.gz) = 1476503d6d18e11541b3c176c1789b95e819c2f85ad78b62024af0cdf921d54e +SIZE (lava_1.8.2.tar.gz) = 1199884 diff --git a/math/R-cran-mclust/Makefile b/math/R-cran-mclust/Makefile index 193809f60520..5c93553e100c 100644 --- a/math/R-cran-mclust/Makefile +++ b/math/R-cran-mclust/Makefile @@ -1,5 +1,5 @@ PORTNAME= mclust -PORTVERSION= 6.1.1 +PORTVERSION= 6.1.2 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} @@ -9,7 +9,8 @@ WWW= https://cran.r-project.org/package=mclust LICENSE= GPLv2+ -TEST_DEPENDS= R-cran-knitr>0:print/R-cran-knitr +TEST_DEPENDS= R-cran-knitr>0:print/R-cran-knitr \ + R-cran-geometry>0:math/R-cran-geometry USES= cran:compiles diff --git a/math/R-cran-mclust/distinfo b/math/R-cran-mclust/distinfo index 01be02bfb332..984aa5b35759 100644 --- a/math/R-cran-mclust/distinfo +++ b/math/R-cran-mclust/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1714582489 -SHA256 (mclust_6.1.1.tar.gz) = ddd7018e5e6ea7f92c7fc9872b391491b7e91c2cd89ef1dcaf4408afb5116775 -SIZE (mclust_6.1.1.tar.gz) = 2753243 +TIMESTAMP = 1761936444 +SHA256 (mclust_6.1.2.tar.gz) = 5b1db4eaa5d5af4a4bc6c0ffaaf3bb0c389a7b143d11305bc3d01f79b12049cc +SIZE (mclust_6.1.2.tar.gz) = 2779985 diff --git a/math/R-cran-reformulas/Makefile b/math/R-cran-reformulas/Makefile index 3dd610836b58..79a00a1dc002 100644 --- a/math/R-cran-reformulas/Makefile +++ b/math/R-cran-reformulas/Makefile @@ -1,5 +1,5 @@ PORTNAME= reformulas -DISTVERSION= 0.4.1 +DISTVERSION= 0.4.2 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} @@ -9,9 +9,7 @@ WWW= https://cran.r-project.org/package=reformulas LICENSE= GPLv3 -CRAN_DEPENDS= R-cran-Rdpack>0:devel/R-cran-Rdpack -BUILD_DEPENDS= ${CRAN_DEPENDS} -RUN_DEPENDS= ${CRAN_DEPENDS} +RUN_DEPENDS= R-cran-Rdpack>0:devel/R-cran-Rdpack USES= cran:auto-plist diff --git a/math/R-cran-reformulas/distinfo b/math/R-cran-reformulas/distinfo index 608f861b9b3e..7b28f9dd8988 100644 --- a/math/R-cran-reformulas/distinfo +++ b/math/R-cran-reformulas/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1746183879 -SHA256 (reformulas_0.4.1.tar.gz) = 60c585ef8791d3f3f8d0c6eeac83fabcf1f21960a6ad1abd2b756603c603f0de -SIZE (reformulas_0.4.1.tar.gz) = 75934 +TIMESTAMP = 1761860646 +SHA256 (reformulas_0.4.2.tar.gz) = 7c2206613af3c615d1327a0cd4c645c2cd4c205b47a3982dc61599ca3e176461 +SIZE (reformulas_0.4.2.tar.gz) = 79964 diff --git a/math/analitza/distinfo b/math/analitza/distinfo index c98a3860fd4d..7d69a97b926a 100644 --- a/math/analitza/distinfo +++ b/math/analitza/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1757410118 -SHA256 (KDE/release-service/25.08.1/analitza-25.08.1.tar.xz) = 603bf3b126692de017a95a781b86aef91512d9db514ecdd4a5e7af75b7e00d14 -SIZE (KDE/release-service/25.08.1/analitza-25.08.1.tar.xz) = 368228 +TIMESTAMP = 1759874864 +SHA256 (KDE/release-service/25.08.2/analitza-25.08.2.tar.xz) = d76e0ca2193c9903f2054612b4ccf6b4f3d4e15c5e577eff33ef5457f6ab7069 +SIZE (KDE/release-service/25.08.2/analitza-25.08.2.tar.xz) = 370044 diff --git a/math/cantor/distinfo b/math/cantor/distinfo index ad3341ea08a6..8b7d6155005b 100644 --- a/math/cantor/distinfo +++ b/math/cantor/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1757410121 -SHA256 (KDE/release-service/25.08.1/cantor-25.08.1.tar.xz) = 1e92aa6ca61be065388d10f0dbc9a09393893190a0bae7c98cdfd863cf4adb94 -SIZE (KDE/release-service/25.08.1/cantor-25.08.1.tar.xz) = 10907968 +TIMESTAMP = 1759874867 +SHA256 (KDE/release-service/25.08.2/cantor-25.08.2.tar.xz) = 259c4416bfc2b60ce9499a1da0fef48d5369b0b63efe75bcb0d0c8906a2f2000 +SIZE (KDE/release-service/25.08.2/cantor-25.08.2.tar.xz) = 10918004 diff --git a/math/igraph/Makefile b/math/igraph/Makefile index 77576e4a38a2..71899fca7f58 100644 --- a/math/igraph/Makefile +++ b/math/igraph/Makefile @@ -1,8 +1,6 @@ PORTNAME= igraph -DISTVERSION= 0.10.12 -PORTREVISION= 5 +DISTVERSION= 1.0.0 CATEGORIES= math -MASTER_SITES= https://github.com/${PORTNAME}/${PORTNAME}/releases/download/${DISTVERSION}/ MAINTAINER= wen@FreeBSD.org COMMENT= Package For Manipulating Undirected And Directed Graphs @@ -22,6 +20,8 @@ USES= bison cmake cpe gnome pathfix USE_GNOME= libxml2 USE_LDCONFIG= yes +USE_GITHUB= yes + CMAKE_ON= BUILD_SHARED_LIBS CMAKE_OFF= BUILD_TESTING CMAKE_ARGS= -DCMAKE_DISABLE_FIND_PACKAGE_Git:BOOL=True \ diff --git a/math/igraph/distinfo b/math/igraph/distinfo index 9fde4781e813..50814a7e5d6f 100644 --- a/math/igraph/distinfo +++ b/math/igraph/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1718460118 -SHA256 (igraph-0.10.12.tar.gz) = b011f7f9f38a3e59924cc9ff652e6d33105fa03fcaf3792f47d752626a0a4625 -SIZE (igraph-0.10.12.tar.gz) = 4373463 +TIMESTAMP = 1761613271 +SHA256 (igraph-igraph-1.0.0_GH0.tar.gz) = 7101f2b13c7d6f8e33119ae150ad3886dbe1b74cca82c102f05645e7c7e81ea3 +SIZE (igraph-igraph-1.0.0_GH0.tar.gz) = 4118891 diff --git a/math/igraph/pkg-plist b/math/igraph/pkg-plist index 8111307cd38c..8f016a454cef 100644 --- a/math/igraph/pkg-plist +++ b/math/igraph/pkg-plist @@ -1,8 +1,6 @@ include/igraph/igraph.h include/igraph/igraph_adjlist.h include/igraph/igraph_arpack.h -include/igraph/igraph_array.h -include/igraph/igraph_array_pmt.h include/igraph/igraph_attributes.h include/igraph/igraph_bipartite.h include/igraph/igraph_bitset.h @@ -42,6 +40,7 @@ include/igraph/igraph_heap_pmt.h include/igraph/igraph_hrg.h include/igraph/igraph_interface.h include/igraph/igraph_interrupt.h +include/igraph/igraph_isomorphism.h include/igraph/igraph_iterators.h include/igraph/igraph_lapack.h include/igraph/igraph_layout.h @@ -51,7 +50,6 @@ include/igraph/igraph_matrix.h include/igraph/igraph_matrix_list.h include/igraph/igraph_matrix_pmt.h include/igraph/igraph_memory.h -include/igraph/igraph_microscopic_update.h include/igraph/igraph_mixing.h include/igraph/igraph_motifs.h include/igraph/igraph_neighborhood.h @@ -65,16 +63,18 @@ include/igraph/igraph_psumtree.h include/igraph/igraph_qsort.h include/igraph/igraph_random.h include/igraph/igraph_reachability.h +include/igraph/igraph_sampling.h include/igraph/igraph_scan.h include/igraph/igraph_separators.h +include/igraph/igraph_setup.h include/igraph/igraph_sparsemat.h +include/igraph/igraph_spatial.h include/igraph/igraph_stack.h include/igraph/igraph_stack_pmt.h include/igraph/igraph_statusbar.h include/igraph/igraph_structural.h include/igraph/igraph_strvector.h include/igraph/igraph_threading.h -include/igraph/igraph_topology.h include/igraph/igraph_transitivity.h include/igraph/igraph_typed_list_pmt.h include/igraph/igraph_types.h @@ -90,6 +90,6 @@ lib/cmake/igraph/igraph-config.cmake lib/cmake/igraph/igraph-targets-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/igraph/igraph-targets.cmake lib/libigraph.so -lib/libigraph.so.3 -lib/libigraph.so.3.1.7 +lib/libigraph.so.4 +lib/libigraph.so.4.0.0 libdata/pkgconfig/igraph.pc diff --git a/math/kalgebra/distinfo b/math/kalgebra/distinfo index ead663017547..d10dbda00ce6 100644 --- a/math/kalgebra/distinfo +++ b/math/kalgebra/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1757410123 -SHA256 (KDE/release-service/25.08.1/kalgebra-25.08.1.tar.xz) = d007a4b2b04a36ba10a9c84d71ee472349a27e7472a8b835cea1ad60172edd58 -SIZE (KDE/release-service/25.08.1/kalgebra-25.08.1.tar.xz) = 953008 +TIMESTAMP = 1759874869 +SHA256 (KDE/release-service/25.08.2/kalgebra-25.08.2.tar.xz) = 2208b4f965876eb4b3f42eaae06c6f367ff0735b245d9abacf2f2c975a714f10 +SIZE (KDE/release-service/25.08.2/kalgebra-25.08.2.tar.xz) = 953104 diff --git a/math/kalk/distinfo b/math/kalk/distinfo index 23c7685022b9..0cfe4e1c7bab 100644 --- a/math/kalk/distinfo +++ b/math/kalk/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1757410123 -SHA256 (KDE/release-service/25.08.1/kalk-25.08.1.tar.xz) = 62cfb38a58cd7b33dfd5efe1e9e3c486c1615e1ef92a787d4c63e07b8d77af9c -SIZE (KDE/release-service/25.08.1/kalk-25.08.1.tar.xz) = 79120 +TIMESTAMP = 1759874869 +SHA256 (KDE/release-service/25.08.2/kalk-25.08.2.tar.xz) = f439627aa0980290a2bbf78b61b1a03d38b7de1c1aaa71708867bb5edd7dd083 +SIZE (KDE/release-service/25.08.2/kalk-25.08.2.tar.xz) = 79112 diff --git a/math/kbruch/distinfo b/math/kbruch/distinfo index 92b248879a58..577144b3ee96 100644 --- a/math/kbruch/distinfo +++ b/math/kbruch/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1757410126 -SHA256 (KDE/release-service/25.08.1/kbruch-25.08.1.tar.xz) = b2dba99b7039ca98a77d56d088baa0f31566dedb5ffacc9b88c8fd17a2d05776 -SIZE (KDE/release-service/25.08.1/kbruch-25.08.1.tar.xz) = 5163308 +TIMESTAMP = 1759874872 +SHA256 (KDE/release-service/25.08.2/kbruch-25.08.2.tar.xz) = b0b4e7fda9b603bacc2c629abbcd914069c6c64a27417fad223cd8325da3d12c +SIZE (KDE/release-service/25.08.2/kbruch-25.08.2.tar.xz) = 5163436 diff --git a/math/kcalc/distinfo b/math/kcalc/distinfo index 56922c080505..e9d9a18e9503 100644 --- a/math/kcalc/distinfo +++ b/math/kcalc/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1757410128 -SHA256 (KDE/release-service/25.08.1/kcalc-25.08.1.tar.xz) = fa9a892ac539dc250e4bdb243358d859aa024bf65479576c5a089c6b4435c155 -SIZE (KDE/release-service/25.08.1/kcalc-25.08.1.tar.xz) = 484440 +TIMESTAMP = 1759874874 +SHA256 (KDE/release-service/25.08.2/kcalc-25.08.2.tar.xz) = 927d5cb3d67e312f1478059886fb17a87f6218a02b38594df1643f7c58bf0781 +SIZE (KDE/release-service/25.08.2/kcalc-25.08.2.tar.xz) = 484316 diff --git a/math/kig/distinfo b/math/kig/distinfo index 09be68869c49..856a6fe29eb1 100644 --- a/math/kig/distinfo +++ b/math/kig/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1757410130 -SHA256 (KDE/release-service/25.08.1/kig-25.08.1.tar.xz) = f25a61a481b89a5a57dee616bc1bb35049c9ac2673b2480b4723f0e0c7c15f7f -SIZE (KDE/release-service/25.08.1/kig-25.08.1.tar.xz) = 3260744 +TIMESTAMP = 1759874877 +SHA256 (KDE/release-service/25.08.2/kig-25.08.2.tar.xz) = 60d38040156f3b0126388d9405e80d46b52efc4fb895432e4e61879d0bb3f9f3 +SIZE (KDE/release-service/25.08.2/kig-25.08.2.tar.xz) = 3262852 diff --git a/math/kmplot/distinfo b/math/kmplot/distinfo index eaaf687e446b..ecbee5e19684 100644 --- a/math/kmplot/distinfo +++ b/math/kmplot/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1757410133 -SHA256 (KDE/release-service/25.08.1/kmplot-25.08.1.tar.xz) = 1a29406d803b6f1e7c5c35285ef76a445322ae940919b8bbf5c3481e298e2311 -SIZE (KDE/release-service/25.08.1/kmplot-25.08.1.tar.xz) = 3029556 +TIMESTAMP = 1759874879 +SHA256 (KDE/release-service/25.08.2/kmplot-25.08.2.tar.xz) = 027cb1f4b00e3d3a5062c791ee9108ba5e83717fe2310d6f33d8fceeea0d91e2 +SIZE (KDE/release-service/25.08.2/kmplot-25.08.2.tar.xz) = 3030504 diff --git a/math/mathmod/Makefile b/math/mathmod/Makefile index c9138d81619b..fbcf4f1c6b0a 100644 --- a/math/mathmod/Makefile +++ b/math/mathmod/Makefile @@ -1,5 +1,5 @@ PORTNAME= MathMod -PORTVERSION= 12.1 +PORTVERSION= 13.0 CATEGORIES= math graphics MAINTAINER= thierry@FreeBSD.org diff --git a/math/mathmod/distinfo b/math/mathmod/distinfo index 4a63a2d66955..2c247f4066c3 100644 --- a/math/mathmod/distinfo +++ b/math/mathmod/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1744369812 -SHA256 (parisolab-mathmod-12.1_GH0.tar.gz) = 13e99550a1982f7d06a3c82e46defa6221505682647488ba91b8e3d60698a443 -SIZE (parisolab-mathmod-12.1_GH0.tar.gz) = 9475468 +TIMESTAMP = 1761935042 +SHA256 (parisolab-mathmod-13.0_GH0.tar.gz) = b14fa6821d77550723f3bde134169b8a0eacb827cb8be63c68baf38b076864c1 +SIZE (parisolab-mathmod-13.0_GH0.tar.gz) = 9407320 diff --git a/math/mfem/Makefile b/math/mfem/Makefile index 4982ae01cb02..7434da47b5d9 100644 --- a/math/mfem/Makefile +++ b/math/mfem/Makefile @@ -1,7 +1,6 @@ PORTNAME= mfem DISTVERSIONPREFIX= v -DISTVERSION= 4.7 -PORTREVISION= 1 +DISTVERSION= 4.8 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org diff --git a/math/mfem/distinfo b/math/mfem/distinfo index b1f0f1520b57..1e2c9487adf4 100644 --- a/math/mfem/distinfo +++ b/math/mfem/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1737154420 -SHA256 (mfem-mfem-v4.7_GH0.tar.gz) = 731bc2665c13d4099f9c9c946eb83ab07cd2e78a9575d4fa62a96cdb40d6ba0f -SIZE (mfem-mfem-v4.7_GH0.tar.gz) = 3808224 +TIMESTAMP = 1761889800 +SHA256 (mfem-mfem-v4.8_GH0.tar.gz) = 65472f732d273832c64b2c39460649dd862df674222c71bfa82cf2da76705052 +SIZE (mfem-mfem-v4.8_GH0.tar.gz) = 4126493 diff --git a/math/mfem/pkg-plist b/math/mfem/pkg-plist index f92dbc093847..b87869c1dcfc 100644 --- a/math/mfem/pkg-plist +++ b/math/mfem/pkg-plist @@ -32,6 +32,7 @@ include/mfem/fem/dgmassinv.hpp include/mfem/fem/dgmassinv_kernels.hpp include/mfem/fem/doftrans.hpp include/mfem/fem/eltrans.hpp +include/mfem/fem/eltrans/eltrans_basis.hpp include/mfem/fem/estimators.hpp include/mfem/fem/fe.hpp include/mfem/fem/fe/face_map_utils.hpp @@ -42,6 +43,7 @@ include/mfem/fem/fe/fe_l2.hpp include/mfem/fem/fe/fe_nd.hpp include/mfem/fem/fe/fe_nurbs.hpp include/mfem/fem/fe/fe_pos.hpp +include/mfem/fem/fe/fe_pyramid.hpp include/mfem/fem/fe/fe_rt.hpp include/mfem/fem/fe/fe_ser.hpp include/mfem/fem/fe_coll.hpp @@ -54,6 +56,7 @@ include/mfem/fem/geom.hpp include/mfem/fem/gridfunc.hpp include/mfem/fem/gslib.hpp include/mfem/fem/hybridization.hpp +include/mfem/fem/hybridization_ext.hpp include/mfem/fem/hyperbolic.hpp include/mfem/fem/integ/bilininteg_diffusion_kernels.hpp include/mfem/fem/integ/bilininteg_elasticity_kernels.hpp @@ -61,9 +64,12 @@ include/mfem/fem/integ/bilininteg_hcurl_kernels.hpp include/mfem/fem/integ/bilininteg_hcurlhdiv_kernels.hpp include/mfem/fem/integ/bilininteg_hdiv_kernels.hpp include/mfem/fem/integ/bilininteg_mass_kernels.hpp +include/mfem/fem/integrator.hpp include/mfem/fem/intrules.hpp include/mfem/fem/intrules_cut.hpp include/mfem/fem/kdtree.hpp +include/mfem/fem/kernel_dispatch.hpp +include/mfem/fem/kernel_reporter.hpp include/mfem/fem/kernels.hpp include/mfem/fem/linearform.hpp include/mfem/fem/linearform_ext.hpp @@ -97,8 +103,8 @@ include/mfem/fem/plinearform.hpp include/mfem/fem/pnonlinearform.hpp include/mfem/fem/prestriction.hpp include/mfem/fem/qfunction.hpp -include/mfem/fem/qinterp/dispatch.hpp include/mfem/fem/qinterp/eval.hpp +include/mfem/fem/qinterp/eval_hdiv.hpp include/mfem/fem/qinterp/grad.hpp include/mfem/fem/qspace.hpp include/mfem/fem/quadinterpolator.hpp @@ -142,6 +148,7 @@ include/mfem/general/mem_manager.hpp include/mfem/general/occa.hpp include/mfem/general/optparser.hpp include/mfem/general/osockstream.hpp +include/mfem/general/reducers.hpp include/mfem/general/sets.hpp include/mfem/general/socketstream.hpp include/mfem/general/sort_pairs.hpp @@ -154,6 +161,11 @@ include/mfem/general/version.hpp include/mfem/general/zstr.hpp include/mfem/linalg/amgxsolver.hpp include/mfem/linalg/auxiliary.hpp +include/mfem/linalg/batched/batched.hpp +include/mfem/linalg/batched/gpu_blas.hpp +include/mfem/linalg/batched/magma.hpp +include/mfem/linalg/batched/native.hpp +include/mfem/linalg/batched/solver.hpp include/mfem/linalg/blockmatrix.hpp include/mfem/linalg/blockoperator.hpp include/mfem/linalg/blockvector.hpp @@ -172,8 +184,10 @@ include/mfem/linalg/hypre.hpp include/mfem/linalg/hypre_parcsr.hpp include/mfem/linalg/invariants.hpp include/mfem/linalg/kernels.hpp +include/mfem/linalg/lapack.hpp include/mfem/linalg/linalg.hpp include/mfem/linalg/matrix.hpp +include/mfem/linalg/mma.hpp include/mfem/linalg/mumps.hpp include/mfem/linalg/ode.hpp include/mfem/linalg/operator.hpp @@ -223,6 +237,8 @@ include/mfem/mesh/pyramid.hpp include/mfem/mesh/quadrilateral.hpp include/mfem/mesh/segment.hpp include/mfem/mesh/spacing.hpp +include/mfem/mesh/submesh/ncsubmesh.hpp +include/mfem/mesh/submesh/pncsubmesh.hpp include/mfem/mesh/submesh/psubmesh.hpp include/mfem/mesh/submesh/ptransfermap.hpp include/mfem/mesh/submesh/submesh.hpp @@ -238,10 +254,12 @@ include/mfem/mesh/wedge.hpp include/mfem/mfem-performance.hpp include/mfem/mfem.hpp lib/cmake/mfem/MFEMConfig.cmake +lib/cmake/mfem/MFEMConfig.cmake.bak lib/cmake/mfem/MFEMConfigVersion.cmake lib/cmake/mfem/MFEMTargets-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/mfem/MFEMTargets.cmake lib/libmfem.so -lib/libmfem.so.4.7.0 +lib/libmfem.so.4.8.0 %%DATADIR%%/config.mk %%DATADIR%%/test.mk +@dir include/mfem/fem/gslib diff --git a/math/py-mathics/Makefile b/math/py-mathics/Makefile index 6f5921558a7f..4f9ae0bc390b 100644 --- a/math/py-mathics/Makefile +++ b/math/py-mathics/Makefile @@ -1,6 +1,6 @@ PORTNAME= Mathics3 PORTVERSION= 9.0.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -73,7 +73,7 @@ TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ #GH_ACCOUNT= ${PORTNAME:tl} USES= python shebangfix -USE_PYTHON= cython cython_run noflavors pep517 +USE_PYTHON= cython3 cython3_run noflavors pep517 MAKE_ENV+= USE_CYTHON=yes SHEBANG_GLOB= *.py diff --git a/math/py-minorminer/Makefile b/math/py-minorminer/Makefile index 17c8d881369a..9b36301fa920 100644 --- a/math/py-minorminer/Makefile +++ b/math/py-minorminer/Makefile @@ -5,7 +5,8 @@ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Heuristic tool for minor embedding of graphs -WWW= https://docs.ocean.dwavesys.com/projects/minorminer/en/latest/ +WWW= https://docs.ocean.dwavesys.com/projects/minorminer/en/latest/ \ + https://github.com/dwavesystems/minorminer LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE diff --git a/math/py-pyodesys/Makefile b/math/py-pyodesys/Makefile index 1a125b010f41..8e9cc4a15df7 100644 --- a/math/py-pyodesys/Makefile +++ b/math/py-pyodesys/Makefile @@ -1,6 +1,5 @@ PORTNAME= pyodesys -DISTVERSION= 0.14.4 -PORTREVISION= 2 +DISTVERSION= 0.14.5 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -12,17 +11,26 @@ WWW= https://github.com/bjodah/pyodesys LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.5:math/py-matplotlib@${PY_FLAVOR} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.5:math/py-matplotlib@${PY_FLAVOR} \ ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}notebook>=5.7.8:www/py-notebook@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.2.3:science/py-scipy@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}sym>=0.3.4:math/py-sym@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}sympy>=1.5.1:math/py-sympy@${PY_FLAVOR} + ${PYTHON_PKGNAMEPREFIX}sym>=0.3.7:math/py-sym@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}sympy>=1.5.1:math/py-sympy@${PY_FLAVOR} \ + ${EXTRA_RUN_DEPENDS} +EXTRAS_RUN_DEPENDS= \ + ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pycodeexport>=0.1.2:devel/py-pycodeexport@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pycompilation>=0.4.9:devel/py-pycompilation@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pygslodeiv2>=0.9.1:math/py-pygslodeiv2@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pyodeint>=0.10.1:math/py-pyodeint@${PY_FLAVOR} + # TODO pycvodes>=0.13.1 - doesn't build with sundials TEST_DEPENDS= ${LOCALBASE}/include/boost/numeric/ublas/matrix.hpp:devel/boost-libs \ ${LOCALBASE}/include/gsl/gsl_errno.h:math/gsl USES= display:test localbase:ldflags python shebangfix -USE_PYTHON= distutils autoplist pytest +USE_PYTHON= distutils autoplist pytest # tests can't run because of missing optional deps like pycvodes which doesn't build with latest sundials SHEBANG_GLOB= *.py @@ -32,15 +40,4 @@ NO_ARCH= yes BINARY_ALIAS= python3=${PYTHON_CMD} -OPTIONS_DEFINE= EXTRAS -OPTIONS_DEFAULT= EXTRAS - -EXTRAS_DESC= Install optional dependencies for additional functionality -EXTRAS_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pycodeexport>=0.1.2:devel/py-pycodeexport@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pycompilation>=0.4.9:devel/py-pycompilation@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pygslodeiv2>=0.9.1:math/py-pygslodeiv2@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pyodeint>=0.10.1:math/py-pyodeint@${PY_FLAVOR} - # TODO pycvodes>=0.13.1 - doesn't build with sundials - .include <bsd.port.mk> diff --git a/math/py-pyodesys/distinfo b/math/py-pyodesys/distinfo index 3ad5d3a690d7..5b57b3235991 100644 --- a/math/py-pyodesys/distinfo +++ b/math/py-pyodesys/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1716788057 -SHA256 (pyodesys-0.14.4.tar.gz) = 584e3b8e6c5c633d964d8c6c9c865d348497bf71048de69dd601b65b8d6b882e -SIZE (pyodesys-0.14.4.tar.gz) = 107851 +TIMESTAMP = 1761714821 +SHA256 (pyodesys-0.14.5.tar.gz) = 16beceb5ca40c8ebe3271402486f1bbedd6a138c6a21ebad9e66e6e911c8dc6f +SIZE (pyodesys-0.14.5.tar.gz) = 243150 diff --git a/math/py-sym/Makefile b/math/py-sym/Makefile index da9b826be89c..70c70275042a 100644 --- a/math/py-sym/Makefile +++ b/math/py-sym/Makefile @@ -1,6 +1,5 @@ PORTNAME= sym -DISTVERSION= 0.3.5 -PORTREVISION= 2 +DISTVERSION= 0.3.7 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -15,8 +14,12 @@ LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYNUMPY} USES= python -USE_PYTHON= distutils autoplist +USE_PYTHON= distutils autoplist pytest NO_ARCH= yes +TEST_WRKSRC= ${WRKSRC}/sym/tests + +# tests as of 0.3.7: 117 passed, 3 warnings in 0.91s + .include <bsd.port.mk> diff --git a/math/py-sym/distinfo b/math/py-sym/distinfo index b6d94e1d7c3e..1de9592ab43e 100644 --- a/math/py-sym/distinfo +++ b/math/py-sym/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1624457232 -SHA256 (sym-0.3.5.tar.gz) = 854ddd18f0a1f94c9590012e50a139b499b407c90e9ebd407c40285627784ab8 -SIZE (sym-0.3.5.tar.gz) = 31098 +TIMESTAMP = 1761714549 +SHA256 (sym-0.3.7.tar.gz) = e46567eab524266403522e913679566fece87fe70ce7071bfabc1b719d65265e +SIZE (sym-0.3.7.tar.gz) = 32915 diff --git a/math/rankwidth/Makefile b/math/rankwidth/Makefile index 79d032710033..ff62a9457441 100644 --- a/math/rankwidth/Makefile +++ b/math/rankwidth/Makefile @@ -11,6 +11,9 @@ WWW= https://sourceforge.net/projects/rankwidth/ LICENSE= GPLv2 +# See https://sourceforge.net/p/rankwidth/tickets/4/ +BROKEN= does not support igraph>=1.0.0 + LIB_DEPENDS= libigraph.so:math/igraph USES= autoreconf libtool localbase pkgconfig diff --git a/math/rocs/Makefile b/math/rocs/Makefile index 0f9a12347a5b..dab1cb906d75 100644 --- a/math/rocs/Makefile +++ b/math/rocs/Makefile @@ -1,6 +1,5 @@ PORTNAME= rocs DISTVERSION= ${KDE_APPLICATIONS_VERSION} -PORTREVISION= 1 CATEGORIES= math education kde kde-applications MAINTAINER= kde@FreeBSD.org diff --git a/math/rocs/distinfo b/math/rocs/distinfo index 1616b0315a3d..b8aeeff490ab 100644 --- a/math/rocs/distinfo +++ b/math/rocs/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1757410135 -SHA256 (KDE/release-service/25.08.1/rocs-25.08.1.tar.xz) = ecb9e7032ea8360fade8dbef0e62c06261d2c28fe7883ce8fa2a0bf2d9992a87 -SIZE (KDE/release-service/25.08.1/rocs-25.08.1.tar.xz) = 1569016 +TIMESTAMP = 1759874882 +SHA256 (KDE/release-service/25.08.2/rocs-25.08.2.tar.xz) = 04bfb3c61078653bc78994d23622ba42dd3cb03509a0c22185783951f1fa6e55 +SIZE (KDE/release-service/25.08.2/rocs-25.08.2.tar.xz) = 1572352 diff --git a/math/sundials/Makefile b/math/sundials/Makefile index aabdd8134d52..2c4f5e8c7455 100644 --- a/math/sundials/Makefile +++ b/math/sundials/Makefile @@ -1,6 +1,5 @@ PORTNAME= sundials -DISTVERSION= 7.2.1 -PORTREVISION= 5 +DISTVERSION= 7.5.0 CATEGORIES= math MASTER_SITES= https://github.com/LLNL/sundials/releases/download/v${DISTVERSION}/ @@ -83,4 +82,6 @@ PETSC_BROKEN= ERROR: PETSc not functional due to index size mismatch: SUNDIALS_ post-install: @${RM} ${STAGEDIR}${PREFIX}/include/sundials/LICENSE +# tests as of 7.5.0: 97% tests passed, 5 tests failed out of 190, see https://github.com/LLNL/sundials/issues/792 + .include <bsd.port.mk> diff --git a/math/sundials/distinfo b/math/sundials/distinfo index 75157f94d5f2..416edf7db310 100644 --- a/math/sundials/distinfo +++ b/math/sundials/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1734866493 -SHA256 (sundials-7.2.1.tar.gz) = 3781e3f7cdf372ca12f7fbe64f561a8b9a507b8a8b2c4d6ce28d8e4df4befbea -SIZE (sundials-7.2.1.tar.gz) = 94198358 +TIMESTAMP = 1761757690 +SHA256 (sundials-7.5.0.tar.gz) = 089ac659507def738b7a65b574ffe3a900d38569e3323d9709ebed3e445adecc +SIZE (sundials-7.5.0.tar.gz) = 92920912 diff --git a/math/sundials/pkg-plist b/math/sundials/pkg-plist index c93d79a472e9..e14f29f9e485 100644 --- a/math/sundials/pkg-plist +++ b/math/sundials/pkg-plist @@ -46,11 +46,17 @@ include/nvector/nvector_serial.h include/sunadaptcontroller/sunadaptcontroller_imexgus.h include/sunadaptcontroller/sunadaptcontroller_mrihtol.h include/sunadaptcontroller/sunadaptcontroller_soderlind.h +include/sunadjointcheckpointscheme/sunadjointcheckpointscheme_fixed.h +include/sunadjointcheckpointscheme/sundials_adjointcheckpointscheme.h +include/sunadjointcheckpointscheme/sundials_adjointstepper.h include/sundials/NOTICE include/sundials/priv/sundials_context_impl.h include/sundials/priv/sundials_errors_impl.h +include/sundials/priv/sundials_logger_macros.h %%MPI%%include/sundials/priv/sundials_mpi_errors_impl.h include/sundials/sundials_adaptcontroller.h +include/sundials/sundials_adjointcheckpointscheme.h +include/sundials/sundials_adjointstepper.h include/sundials/sundials_band.h include/sundials/sundials_base.hpp include/sundials/sundials_config.h @@ -61,6 +67,7 @@ include/sundials/sundials_core.h include/sundials/sundials_core.hpp include/sundials/sundials_dense.h include/sundials/sundials_direct.h +include/sundials/sundials_domeigestimator.h include/sundials/sundials_errors.h include/sundials/sundials_export.h include/sundials/sundials_futils.h @@ -85,6 +92,8 @@ include/sundials/sundials_stepper.h include/sundials/sundials_types.h include/sundials/sundials_types_deprecated.h include/sundials/sundials_version.h +include/sundomeigest/sundomeigest_arnoldi.h +include/sundomeigest/sundomeigest_power.h include/sunlinsol/sunlinsol_band.h include/sunlinsol/sunlinsol_dense.h %%KLU%%include/sunlinsol/sunlinsol_klu.h @@ -107,94 +116,100 @@ lib/cmake/sundials/SUNDIALSTargets-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/sundials/SUNDIALSTargets.cmake lib/libsundials_arkode.so lib/libsundials_arkode.so.6 -lib/libsundials_arkode.so.6.2.1 +lib/libsundials_arkode.so.6.5.0 lib/libsundials_core.so lib/libsundials_core.so.7 -lib/libsundials_core.so.7.2.1 +lib/libsundials_core.so.7.5.0 lib/libsundials_cvode.so lib/libsundials_cvode.so.7 -lib/libsundials_cvode.so.7.2.1 +lib/libsundials_cvode.so.7.5.0 lib/libsundials_cvodes.so lib/libsundials_cvodes.so.7 -lib/libsundials_cvodes.so.7.2.1 +lib/libsundials_cvodes.so.7.5.0 lib/libsundials_ida.so lib/libsundials_ida.so.7 -lib/libsundials_ida.so.7.2.1 +lib/libsundials_ida.so.7.5.0 lib/libsundials_idas.so lib/libsundials_idas.so.6 -lib/libsundials_idas.so.6.2.1 +lib/libsundials_idas.so.6.5.0 lib/libsundials_kinsol.so lib/libsundials_kinsol.so.7 -lib/libsundials_kinsol.so.7.2.1 +lib/libsundials_kinsol.so.7.5.0 lib/libsundials_nvecmanyvector.so lib/libsundials_nvecmanyvector.so.7 -lib/libsundials_nvecmanyvector.so.7.2.1 +lib/libsundials_nvecmanyvector.so.7.5.0 %%MPI%%lib/libsundials_nvecmpimanyvector.so %%MPI%%lib/libsundials_nvecmpimanyvector.so.7 -%%MPI%%lib/libsundials_nvecmpimanyvector.so.7.2.1 +%%MPI%%lib/libsundials_nvecmpimanyvector.so.7.5.0 %%MPI%%lib/libsundials_nvecmpiplusx.so %%MPI%%lib/libsundials_nvecmpiplusx.so.7 -%%MPI%%lib/libsundials_nvecmpiplusx.so.7.2.1 +%%MPI%%lib/libsundials_nvecmpiplusx.so.7.5.0 %%OPENMP%%lib/libsundials_nvecopenmp.so %%OPENMP%%lib/libsundials_nvecopenmp.so.7 -%%OPENMP%%lib/libsundials_nvecopenmp.so.7.2.1 +%%OPENMP%%lib/libsundials_nvecopenmp.so.7.5.0 %%MPI%%lib/libsundials_nvecparallel.so %%MPI%%lib/libsundials_nvecparallel.so.7 -%%MPI%%lib/libsundials_nvecparallel.so.7.2.1 +%%MPI%%lib/libsundials_nvecparallel.so.7.5.0 %%HYPRE%%lib/libsundials_nvecparhyp.so %%HYPRE%%lib/libsundials_nvecparhyp.so.7 -%%HYPRE%%lib/libsundials_nvecparhyp.so.7.2.1 +%%HYPRE%%lib/libsundials_nvecparhyp.so.7.5.0 %%PETSC%%lib/libsundials_nvecpetsc.so %%PETSC%%lib/libsundials_nvecpetsc.so.7 -%%PETSC%%lib/libsundials_nvecpetsc.so.7.2.1 +%%PETSC%%lib/libsundials_nvecpetsc.so.7.5.0 lib/libsundials_nvecpthreads.so lib/libsundials_nvecpthreads.so.7 -lib/libsundials_nvecpthreads.so.7.2.1 +lib/libsundials_nvecpthreads.so.7.5.0 lib/libsundials_nvecserial.so lib/libsundials_nvecserial.so.7 -lib/libsundials_nvecserial.so.7.2.1 +lib/libsundials_nvecserial.so.7.5.0 +lib/libsundials_sundomeigestarnoldi.so +lib/libsundials_sundomeigestarnoldi.so.1 +lib/libsundials_sundomeigestarnoldi.so.1.0.0 +lib/libsundials_sundomeigestpower.so +lib/libsundials_sundomeigestpower.so.1 +lib/libsundials_sundomeigestpower.so.1.0.0 lib/libsundials_sunlinsolband.so lib/libsundials_sunlinsolband.so.5 -lib/libsundials_sunlinsolband.so.5.2.1 +lib/libsundials_sunlinsolband.so.5.5.0 lib/libsundials_sunlinsoldense.so lib/libsundials_sunlinsoldense.so.5 -lib/libsundials_sunlinsoldense.so.5.2.1 +lib/libsundials_sunlinsoldense.so.5.5.0 %%KLU%%lib/libsundials_sunlinsolklu.so %%KLU%%lib/libsundials_sunlinsolklu.so.5 -%%KLU%%lib/libsundials_sunlinsolklu.so.5.2.1 +%%KLU%%lib/libsundials_sunlinsolklu.so.5.5.0 %%LAPACK%%lib/libsundials_sunlinsollapackband.so %%LAPACK%%lib/libsundials_sunlinsollapackband.so.5 -%%LAPACK%%lib/libsundials_sunlinsollapackband.so.5.2.1 +%%LAPACK%%lib/libsundials_sunlinsollapackband.so.5.5.0 %%LAPACK%%lib/libsundials_sunlinsollapackdense.so %%LAPACK%%lib/libsundials_sunlinsollapackdense.so.5 -%%LAPACK%%lib/libsundials_sunlinsollapackdense.so.5.2.1 +%%LAPACK%%lib/libsundials_sunlinsollapackdense.so.5.5.0 lib/libsundials_sunlinsolpcg.so lib/libsundials_sunlinsolpcg.so.5 -lib/libsundials_sunlinsolpcg.so.5.2.1 +lib/libsundials_sunlinsolpcg.so.5.5.0 lib/libsundials_sunlinsolspbcgs.so lib/libsundials_sunlinsolspbcgs.so.5 -lib/libsundials_sunlinsolspbcgs.so.5.2.1 +lib/libsundials_sunlinsolspbcgs.so.5.5.0 lib/libsundials_sunlinsolspfgmr.so lib/libsundials_sunlinsolspfgmr.so.5 -lib/libsundials_sunlinsolspfgmr.so.5.2.1 +lib/libsundials_sunlinsolspfgmr.so.5.5.0 lib/libsundials_sunlinsolspgmr.so lib/libsundials_sunlinsolspgmr.so.5 -lib/libsundials_sunlinsolspgmr.so.5.2.1 +lib/libsundials_sunlinsolspgmr.so.5.5.0 lib/libsundials_sunlinsolsptfqmr.so lib/libsundials_sunlinsolsptfqmr.so.5 -lib/libsundials_sunlinsolsptfqmr.so.5.2.1 +lib/libsundials_sunlinsolsptfqmr.so.5.5.0 lib/libsundials_sunmatrixband.so lib/libsundials_sunmatrixband.so.5 -lib/libsundials_sunmatrixband.so.5.2.1 +lib/libsundials_sunmatrixband.so.5.5.0 lib/libsundials_sunmatrixdense.so lib/libsundials_sunmatrixdense.so.5 -lib/libsundials_sunmatrixdense.so.5.2.1 +lib/libsundials_sunmatrixdense.so.5.5.0 lib/libsundials_sunmatrixsparse.so lib/libsundials_sunmatrixsparse.so.5 -lib/libsundials_sunmatrixsparse.so.5.2.1 +lib/libsundials_sunmatrixsparse.so.5.5.0 lib/libsundials_sunnonlinsolfixedpoint.so lib/libsundials_sunnonlinsolfixedpoint.so.4 -lib/libsundials_sunnonlinsolfixedpoint.so.4.2.1 +lib/libsundials_sunnonlinsolfixedpoint.so.4.5.0 lib/libsundials_sunnonlinsolnewton.so lib/libsundials_sunnonlinsolnewton.so.4 -lib/libsundials_sunnonlinsolnewton.so.4.2.1 +lib/libsundials_sunnonlinsolnewton.so.4.5.0 |