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* biology/muscle: improve portRodrigo Osorio2026-07-212-6/+22
* biology/muscle: update 3.8.1551 -> 5.1Rodrigo Osorio2026-07-215-136/+83
* lang/rust: Bump revisions after 1.97.1Mikael Urankar2026-07-212-0/+2
* biology/samtools: Update to 1.24Jason W. Bacon2026-07-113-8/+7
* biology/bcftools: Update to 1.24Jason W. Bacon2026-07-113-6/+6
* biology/htslib: Update to 1.24Jason W. Bacon2026-07-115-4/+27
* biology/ncbi-toolkit: Unbreak by fixing chained C comparison in tools/readdb.cYuri Victorovich2026-07-112-1/+17
* biology/TrimGalore: update 2.2.0 -> 2.3.0Rodrigo Osorio2026-07-103-14/+28
* various: Bump go ports for go-1.25.12 / 1.26.5Dag-Erling Smørgrav2026-07-105-5/+5
* biology/py-gtfparse: update 2.7.1 → 2.8.0Yuri Victorovich2026-07-092-4/+4
* biology/coverm: update 0.7.0 → 0.8.0Yuri Victorovich2026-07-083-478/+481
* misc/libxdf: update 0.991 → 1.0.1Yuri Victorovich2026-07-071-1/+1
* databases/lmdb0: Add port for LMDB 0.9.x legacy ABIXin LI2026-07-062-2/+4
* biology/chip-seq: Update to 0.3.1Jason W. Bacon2026-07-042-5/+9
* biology/atac-seq: Update to 0.3.1Jason W. Bacon2026-07-042-4/+3
* biology/py-goatools: Fix build with python 3.12Jason W. Bacon2026-07-042-3/+19
* all: schedule for removal on 2026-09-15 for lang/cython0Rene Ladan2026-07-021-0/+3
* Mk/bsd.port.mk: mark 14.3 unsupportedRene Ladan2026-07-011-6/+1
* */*: Use C.UTF-8 localeTijl Coosemans2026-06-302-3/+1
* biology/viennarna: update 2.7.0 → 2.7.2Yuri Victorovich2026-06-286-9/+103
* biology/ucsc-userapps: Clean up USES=pythonPo-Chuan Hsieh2026-06-261-1/+1
* biology/py-macs3: Fix USE_PYTHON=cython usagePo-Chuan Hsieh2026-06-261-2/+1
* biology/libsbml: Remove unnecessary substitutionPo-Chuan Hsieh2026-06-261-2/+2
* biology/hyphy: Update to 2.5.101Joseph Mingrone2026-06-243-4/+5
* biology/iqtree: Update to 3.1.3Joseph Mingrone2026-06-242-4/+4
* biology/diamond: Update to 2.2.2Joseph Mingrone2026-06-243-4/+22
* biology/diamond: Update to 2.2.1Joseph Mingrone2026-06-242-4/+4
* biology/py-py2bit: fix build with python different from 3.11Antoine Brodin2026-06-121-1/+1
* biology/py-PySCeS: update 1.2.2 → 1.2.3Yuri Victorovich2026-06-112-10/+10
* biology/linux-foldingathome: Update licenseMateusz Piotrowski2026-06-091-6/+2
* biology/linux-foldingathome: Add manual page fahclient(8) and clean upMateusz Piotrowski2026-06-095-143/+198
* biology/py-loompy: update 3.0.7 → 3.0.8Yuri Victorovich2026-06-085-9/+65
* biology/py-mrcfile: update 1.5.3 → 1.5.4Yuri Victorovich2026-06-082-6/+11
* biology/py-gtfparse: update 2.7.0 → 2.7.1Yuri Victorovich2026-06-082-4/+6
* biology/ncbi-cxx-toolkit: update 30.3.0 → 30.4.0Yuri Victorovich2026-06-062-4/+4
* biology/mothur: Fix build on 16Yuri Victorovich2026-06-051-6/+0
* lang/rust: Bump revisions after 1.96.0Mikael Urankar2026-06-042-1/+2
* various: Bump go ports for go-1.25.11 / go-1.26.4Dag-Erling Smørgrav2026-06-035-5/+5
* biology/py-pyfaidx: update 0.5.9.5 → 0.9.0.4Yuri Victorovich2026-06-022-7/+11
* biology/*: Add CPE infoBernard Spil2026-05-312-2/+6
* biology/py-hits: update 0.1 → 0.5.1Yuri Victorovich2026-05-305-7/+86
* biology/sra-tools: lib64 -> libJason W. Bacon2026-05-295-27/+46
* *: Fix spelling and typos in comments and pkg-descr's of various portsFelipe Matarazzo2026-05-241-1/+1
* biology/p5-TrimGalore: update 0.6.11->2.2.0 and move to biology/TrimGaloreRodrigo Osorio2026-05-2410-61/+725
* biology/minimap2: Update to 2.31Jason W. Bacon2026-05-202-4/+4
* textproc/py-xlsxwriter: update to 3.2.9Antoine Brodin2026-05-181-2/+2
* biology/diamond: Update to 2.2.0Joseph Mingrone2026-05-162-4/+4
* biology/py-gtfparse: update 2.5.0 → 2.7.0Yuri Victorovich2026-05-142-7/+6
* */*: bump PORTREVISION after the upgrade of OpenBLASThierry Thomas2026-05-134-4/+4
* biology/sra-tools: Patch out extraneous scriptsJason W. Bacon2026-05-124-1/+57
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