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* *: Fix spelling and typos in comments and pkg-descr's of various portsFelipe Matarazzo3 days1-1/+1
* biology/p5-TrimGalore: update 0.6.11->2.2.0 and move to biology/TrimGaloreRodrigo Osorio4 days10-61/+725
* biology/minimap2: Update to 2.31Jason W. Bacon7 days2-4/+4
* textproc/py-xlsxwriter: update to 3.2.9Antoine Brodin9 days1-2/+2
* biology/diamond: Update to 2.2.0Joseph Mingrone12 days2-4/+4
* biology/py-gtfparse: update 2.5.0 → 2.7.0Yuri Victorovich14 days2-7/+6
* */*: bump PORTREVISION after the upgrade of OpenBLASThierry Thomas2026-05-134-4/+4
* biology/sra-tools: Patch out extraneous scriptsJason W. Bacon2026-05-124-1/+57
* biology/iqtree: Update to 3.1.2Joseph Mingrone2026-05-113-24/+7
* biology/hyphy: Update to 2.5.98Joseph Mingrone2026-05-113-4/+5
* biology/diamond: Update to 2.1.25Joseph Mingrone2026-05-112-5/+6
* various: Bump ports for Go 1.25.10Adam Weinberger2026-05-095-3/+5
* all: drop support for FreeBSD 13, mips and risc64sfRene Ladan2026-05-0713-17/+10
* biology/locarna: update 2.0.0 → 2.0.1Yuri Victorovich2026-05-062-5/+4
* biology/ncbi-cxx-toolkit: update 30.2.0 → 30.3.0Yuri Victorovich2026-05-062-4/+4
* */*: bump PORTREVISION after switching to NumPy 2.xMax Brazhnikov2026-05-0519-17/+19
* */*: Switch to NumPy 2.xMax Brazhnikov2026-05-0519-25/+25
* biology/iqtree: Fix build with clang 21Joseph Mingrone2026-05-051-0/+17
* biology/vsearch: Update to 2.31.0Jason W. Bacon2026-05-032-4/+4
* biology/py-pyrodigal: update 3.6.3 → 3.7.1Yuri Victorovich2026-05-013-18/+8
* biology/py-pysam: update 0.23.0 → 0.24.0Yuri Victorovich2026-04-282-5/+8
* biology/py-deeptools: Update to 3.5.6Jason W. Bacon2026-04-272-10/+14
* lang/rust: Bump revisions after 1.95.0Mikael Urankar2026-04-271-1/+1
* biology/py-py2bit: Update to 1.0.1Jason W. Bacon2026-04-272-5/+8
* biology/ugene: fix build on aarch64Robert Clausecker2026-04-212-3/+74
* biology/htslib: fix build on armv7 (again)Robert Clausecker2026-04-212-22/+0
* biology/iqtree: Update to 3.1.1Joseph Mingrone2026-04-202-4/+4
* biology/hyphy: Update to 2.5.97Joseph Mingrone2026-04-202-4/+4
* biology/ncbi-cxx-toolkit: update 29.7.0 → 30.2.0Yuri Victorovich2026-04-192-5/+5
* biology/{,py-}biosig: update 2.6.1 → 3.9.5Yuri Victorovich2026-04-185-25/+25
* biology/ugene: Update to 53.1Max Brazhnikov2026-04-1815-1427/+297
* biology/seqan3: update 3.4.0 → 3.4.2Yuri Victorovich2026-04-142-9/+15
* biology/gffread: Update to 0.12.9Jason W. Bacon2026-04-133-9/+14
* biology/barrnap: update 0.9 → 1.10.6Yuri Victorovich2026-04-137-17/+256
* biology/seqkit: update 2.11.0 → 2.13.0Yuri Victorovich2026-04-112-9/+8
* biology/taxonkit: update 0.19.0 → 0.20.0Yuri Victorovich2026-04-112-7/+6
* various: Bump go ports for go-1.25.9 / 1.26.2Dag-Erling Smørgrav2026-04-104-4/+4
* biology/py-resdk: Fix run-dependsYuri Victorovich2026-04-081-1/+1
* */*: bump portrevision for openjdk dependency changeRonald Klop2026-04-081-1/+1
* python.mk: retire ${PYNUMPY}Charlie Li2026-04-0320-26/+26
* math/py-numpy1: bump more RUN_DEPENDS consumersCharlie Li2026-04-032-1/+2
* math/py-numpy: switch all consumers to math/py-numpy1Charlie Li2026-04-0314-13/+14
* */*: bump portrevision after java_default=25 updateRonald Klop2026-04-0216-15/+16
* biology/py-gffutils: update 0.13 → 0.14Yuri Victorovich2026-04-023-8/+32
* biology/ugene: adoptMax Brazhnikov2026-04-011-1/+1
* biology/samtools: Update to 1.23.1Jason W. Bacon2026-03-292-4/+6
* biology/bcftools: Update to 1.23.1Jason W. Bacon2026-03-293-7/+13
* biology/htslib: Update to 1.23.1Jason W. Bacon2026-03-292-6/+8
* biology/vsearch: Update to 2.30.6Jason W. Bacon2026-03-282-4/+4
* biology/sra-tools: Unbreak distfileJason W. Bacon2026-03-261-3/+3
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