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* New port: biology/py-gffutils: Work with GFF and GTF files in a flexible data...Yuri Victorovich2018-10-191-0/+1
* New port: biology/py-pyfaidx: Efficient pythonic random access to fasta subse...Yuri Victorovich2018-10-191-0/+1
* New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) f...Yuri Victorovich2018-10-191-0/+1
* New port: biology/ncbi-cxx-toolkit: NCBI C++ ToolkitYuri Victorovich2018-10-081-0/+1
* biology/tinker: Update 7.1.3 -> 8.4.4; Move to science/Yuri Victorovich2018-10-071-1/+0
* New port: biology/py-loompy: Work with .loom files for single-cell RNA-seq dataYuri Victorovich2018-09-211-0/+1
* Remove expired ports:Rene Ladan2018-08-161-1/+0
* Regular sorting of categories Makefiles.Mathieu Arnold2018-08-081-1/+1
* New port: biology/py-orange3-single-cell: Orange add-on for gene expression o...Yuri Victorovich2018-08-071-0/+1
* New port: biology/exonerate: Generic tool for sequence alignmentYuri Victorovich2018-07-131-0/+1
* New port: biology/stringtie: Transcript assembly and quantification for RNA-seqYuri Victorovich2018-07-111-0/+1
* New port: biology/cytoscape: Software to visualize molecular interaction netw...Yuri Victorovich2018-07-031-0/+1
* New port: biology/igv: Visualization tool for genomic datasetsYuri Victorovich2018-06-251-0/+1
* New port: biology/py-orange3-bioinformatics: Orange add-on providing common f...Yuri Victorovich2018-06-141-0/+1
* New port: biology/py-Genesis-PyAPI: API for the Genesis platform for genetics...Yuri Victorovich2018-06-131-0/+1
* New port: biology/ngs-sdk: Tools and libraries for using data in the INSDC Se...Yuri Victorovich2018-06-101-0/+1
* Remove expired ports:Rene Ladan2018-06-071-4/+0
* Add new port: biology/infernalKirill Ponomarev2018-06-061-0/+1
* biology/clustal-omega: Multiple alignment of nucleic acid and protein, replac...Jason W. Bacon2018-05-211-0/+1
* biology/clustalx: Multiple alignment of nucleic acid and protein sequences wi...Jason W. Bacon2018-05-211-0/+1
* New port, biology/hyphy: Hypothesis testing using PhylogeniesJoseph Mingrone2018-05-111-0/+1
* biology/unanimity: Pacific Biosciences consensus library and applicationsJason W. Bacon2018-04-241-0/+1
* biology/pbcopper: Core C++ library for Pacific Biosciences toolsJason W. Bacon2018-04-231-0/+1
* biology/pbbam: PacBio BAM C++ library, with SWIG bindingsJason W. Bacon2018-04-231-0/+1
* biology/pbseqan: Pacific Biosciences patched and stripped down SeqAnJason W. Bacon2018-04-211-0/+1
* biology/ddocent: Bash pipeline for RAD sequencingJason W. Bacon2018-04-201-0/+1
* biology/freebayes: Bayesian haplotype-based polymorphism discovery and genoty...Jason W. Bacon2018-04-201-0/+1
* biology/vcflib: C++ library and CLI tools for parsing and manipulating VCF filesJason W. Bacon2018-04-171-0/+1
* biology/fastahack: Utility for indexing and sequence extraction from FASTA filesJason W. Bacon2018-04-161-0/+1
* biology/smithwaterman: Smith-waterman-gotoh alignment algorithmJason W. Bacon2018-04-151-0/+1
* biology/tabixpp: C++ wrapper to tabix indexerJason W. Bacon2018-04-141-0/+1
* biology/pear-merger: Memory-efficient and accurate paired-end read mergerJason W. Bacon2018-04-041-0/+1
* biology/seqtk: Tool for processing sequences in FASTA/FASTQ formatJason W. Bacon2018-04-031-0/+1
* biology/trimadap: Trim adapter sequences from Illumina dataJason W. Bacon2018-04-031-0/+1
* biology/rainbow: Efficient clustering and assembling of short readsJason W. Bacon2018-04-021-0/+1
* biology/stacks: Software pipeline for building loci from short-read sequencesJason W. Bacon2018-03-311-0/+1
* biology/bamtools: API and toolkit for handling BAM filesJason W. Bacon2018-03-281-0/+1
* [new port] biology/canu: Single molecule sequence assemblerJason W. Bacon2017-12-221-0/+1
* [new port] biology/p5-TrimGalore: Wrapper around Cutadapt and FastQC for adap...Jason W. Bacon2017-12-091-0/+1
* [new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP)...Jason W. Bacon2017-12-021-0/+1
* [new port] biology/kallisto: Quantify abundances of transcripts from RNA-Seq ...Jason W. Bacon2017-12-021-0/+1
* [new port] biology/fastqc: Quality control tool for high throughput sequence ...Jason W. Bacon2017-11-301-0/+1
* [new port] biology/py-cutadapt: Finds and removes adapter sequences, primers, poJason W. Bacon2017-11-291-0/+1
* New port, biology/iqtree: Efficient phylogenomic softwareJoseph Mingrone2017-10-211-0/+1
* Add p5-Bio-FeatureIO 1.6.905Sunpoet Po-Chuan Hsieh2017-09-151-0/+1
* Remove expired ports:Rene Ladan2017-08-231-1/+0
* bx-python is a python library and associated set of scripts to allow for rapidMartin Wilke2017-05-061-0/+1
* pysam is a lightweight wrapper of the htslib C-API and provides facilities toMartin Wilke2017-05-061-0/+1
* 2017-04-30 devel/stormlib-ghost++: Unfetchable for more than six months (goog...Larry Rosenman2017-04-301-1/+0
* Move devel/rubygem-bio to biology/rubygem-bioSunpoet Po-Chuan Hsieh2017-02-051-0/+1
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