aboutsummaryrefslogtreecommitdiff
path: root/biology/Makefile
Commit message (Expand)AuthorAgeFilesLines
* */Makefile: Sort SUBDIRsPo-Chuan Hsieh2021-09-211-2/+2
* biology/py-libsedml: New port: SED-ML library for PythonYuri Victorovich2021-09-191-0/+1
* biology/libsedml: New port: C++ SED-ML libraryYuri Victorovich2021-09-191-0/+1
* biology/py-libnuml: New port: Numerical Markup Language for PythonYuri Victorovich2021-09-191-0/+1
* biology/libnuml: New port: C++ library for Numerical Markup LanguageYuri Victorovich2021-09-191-0/+1
* biology/sam2pairwise: Show pairwise alignment for each read in a SAM fileJason W. Bacon2021-09-071-0/+1
* biology/py-pywgsim: Modified wgsim genomic data simulatorJason W. Bacon2021-09-061-0/+1
* biology/biolibc-tools: High-performance tools based on biolibcJason W. Bacon2021-08-301-0/+1
* biology/bfc: Correct sequencing errors from Illumina sequencing dataJason W. Bacon2021-08-231-0/+1
* biology/flash: Fast Length Adjustment of SHort readsJason W. Bacon2021-08-231-0/+1
* biology/py-PySCeS: New port: Python Simulator for Cellular SystemsYuri Victorovich2021-08-171-0/+1
* biology/py-python-libsbml: New port: LibSBML Python APIYuri Victorovich2021-08-171-0/+1
* biology/sigviewer: New port: Viewing application for biosignalsYuri Victorovich2021-08-171-0/+1
* biology/biosig: New port: Library for reading and writing different biosignal...Yuri Victorovich2021-08-171-0/+1
* biology/py-ont-fast5-api: Interface to Oxford Nanopore .fast5 filesJason W. Bacon2021-08-131-0/+1
* biology/erminej: Analyses of gene sets, e.g. gene expression profilingJason W. Bacon2021-07-091-0/+1
* biology/py-goatools: Tools for processing and visualizing Gene Ontology termsJason W. Bacon2021-07-021-0/+1
* biology/mmseqs2: Ultra fast and sensitive sequence search and clustering suiteJason W. Bacon2021-06-241-0/+1
* biology/sra-tools: NCBI's toolkit for handling data in INSDC Sequence Read Ar...Jason W. Bacon2021-06-221-0/+1
* biology/biostar-tools: Meta-port for Biostar Handbook toolsJason W. Bacon2021-06-181-0/+1
* biology/peak-classifier: Classify peaks based on GFF featuresJason W. Bacon2021-06-141-0/+1
* biology/taxonkit: New port: Practical and efficient NCBI taxonomy toolkitYuri Victorovich2021-05-261-0/+1
* biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set opera...Yuri Victorovich2021-05-261-0/+1
* New port: biology/seqan3: C++ header-only library for biological sequence ana...Yuri Victorovich2021-05-121-0/+1
* Hook biology/ucsc-userapps to the buildAntoine Brodin2021-04-251-0/+1
* biology/ncbi-entrez-direct: Access to the NCBI's interconnected databasesJason W. Bacon2021-04-241-0/+1
* New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and R...Yuri Victorovich2021-04-201-0/+1
* biology/snpeff: Genetic variant annotation and effect prediction toolboxJason W. Bacon2021-04-181-0/+1
* biology/bbmap: BBMap short read aligner, and other bioinformatic toolsJason W. Bacon2021-04-181-0/+1
* biology/readseq: Read and reformat biosequences, Java command-line versionJason W. Bacon2021-04-181-0/+1
* New port: biology/seqkit: Cross-platform and ultrafast toolkit for FASTA/Q fi...Yuri Victorovich2021-04-161-0/+1
* biology/py-crossmap: Lift over genomics coordinates between assembliesJason W. Bacon2021-04-121-0/+1
* biology/py-bigwig: Python access to bigWig files using libBigWigJason W. Bacon2021-04-121-0/+1
* New port: biology/ncbi-vdb: NCBI's virtualized back-end for accessing Sequenc...Yuri Victorovich2021-04-121-0/+1
* Remove expired ports:Rene Ladan2021-04-071-3/+0
* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-2/+0
* biology/vcf2hap: Generate .hap file from VCF for haplohseqJason W. Bacon2021-03-231-0/+1
* biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF fileJason W. Bacon2021-03-231-0/+1
* biology/vcf-split: Split a multi-sample VCF into single-sample VCFsJason W. Bacon2021-03-211-0/+1
* biology/biolibc: Low-level high-performance bioinformatics libraryJason W. Bacon2021-03-211-0/+1
* biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF formatJason W. Bacon2021-03-151-0/+1
* Move: biology/py-fastTSNE -> math/py-openTSNEYuri Victorovich2021-03-131-1/+0
* New port: biology/rampler: Standalone module for sampling genomic sequencesYuri Victorovich2021-01-191-0/+1
* New port: biology/edlib: Fast C++ library for sequence alignment using edit d...Yuri Victorovich2021-01-191-0/+1
* New port: biology/spoa: C++ implementation of the partial order alignment (PO...Yuri Victorovich2021-01-191-0/+1
* New port: biology/biosoup: Collection of C++ header-only data structures for ...Yuri Victorovich2021-01-191-0/+1
* New port: biology/bioparser: C++ header only parsing library for several form...Yuri Victorovich2021-01-191-0/+1
* Hook haplohseq to the buildAntoine Brodin2021-01-141-0/+1
* biology/pooler: Optimise DNA sequencing primer-set combinationsJason W. Bacon2020-11-151-0/+1
generated by cgit v1.2.3 (git 2.25.1) at 2024-06-06 02:53:35 +0000