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2021-04-01 ftp/wzdftpd: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 astro/roadmap: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/cosmo: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/bomberinstinct: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/drm: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/bygfoot: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/cre: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 irc/hybserv: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 irc/xaric: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 mail/elmo: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 misc/cave: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 security/bugs: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 security/dmitry: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 security/doorman: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 shells/esh: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 sysutils/cpu: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 textproc/libcrm114: No known users, dead upstream
2021-04-01 x11/wmmatrix: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/wmxss: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/tycoon: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/xgrab: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/xbanner: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/bricons: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/xmon: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/cavezofphear: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 astro/saoimage: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/ksmp3play: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/jamin: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/musicbox-tag-editor: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/nspmod: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/cdplay: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/gimmix: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/ghostess: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/wmrecord: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/toolame: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/shout: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 biology/grappa: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 biology/phylip: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 biology/lagan: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 cad/varkon: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 cad/transcalc: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 comms/seyon: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 comms/efax: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 converters/vda2fbd: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 converters/shftool: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 devel/openzz: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 devel/sourcenav: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 devel/gb: Unmaintained and dead upstream
2021-04-01 dns/checkdns: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 dns/inadyn-mt: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 editors/gate: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 editors/thoteditor: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 emulators/cinc: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 emulators/e-uae: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 emulators/dtcyber: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 ftp/jftpgw: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 ftp/pureadmin: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-02 textproc/hs-pandoc-citeproc: Integrated into textproc/hs-pandoc
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Reported by: lwhsu
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vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file
is required by haplohseq. vcf2hap is extremely fast and requires a trivial
amount of memory regardless of the size of the VCF file.
Notes:
svn path=/head/; revision=569036
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ad2vdf extracts allelic depth info from a SAM stream and adds it to a
corresponding single-sample VCF file. SAM input is read via stdin and the VCF
input file is taken as a command-line argument. This allows expensive BAM/CRAM
decoding to be performed in parallel by a separate samtools process.
Notes:
svn path=/head/; revision=569033
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Vcf-split splits a multi-sample VCF into single-sample VCFs, writing thousands
of output files simultaneously. Parsing the TOPMed human chromosome 1 BCF
with bcftools takes two days, so extracting the 137,977 samples one at a time
or using thousands of parallel readers of the same file is impractical.
Vcf-split solves this by generating thousands of single-sample outputs during
a single sweep through the multi-sample input.
Notes:
svn path=/head/; revision=568922
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Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data. Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications. These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.
Notes:
svn path=/head/; revision=568921
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Generate random genomic data in FASTA/FASTQ, SAM, or VCF format, suitable for
small academic examples or test inputs of arbitrary size. Output can be piped
directly to programs or redirected to a file and edited to taste.
Notes:
svn path=/head/; revision=568501
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Project was renamed and reimplemented.
Notes:
svn path=/head/; revision=568296
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Notes:
svn path=/head/; revision=562039
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distance
Notes:
svn path=/head/; revision=562038
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(POA) algorithm
Notes:
svn path=/head/; revision=562036
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bioinformatics
Notes:
svn path=/head/; revision=562035
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formats in bioinformatics
Notes:
svn path=/head/; revision=562033
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Notes:
svn path=/head/; revision=561604
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Optimise combinations of primers and minimise the formation of dimers in
multiplexed PCR.
Primer Pooler can:
* Check through each proposed pool for combinations that are likely to form
dimers
* Automatically move prospective amplicons between proposed pools to reduce
dimer formation
* Automatically search the genome sequence to find which amplicons overlap, and
place their corresponding primers in separate pools
* Optionally keep pool sizes within a specified range
* Handle thousands of primers without being slow (useful for high-throughput
sequencing applications)
* Do all of the above with degenerate primers too.
WWW: http://ssb22.user.srcf.net/pooler/
PR: ports/251065
Submitted by: Silas S. Brown <silas-freebsd@flatline.org.uk>
Notes:
svn path=/head/; revision=555418
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Version 2.1.8 supports python 3
Notes:
svn path=/head/; revision=549943
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2020-09-15 audio/abraca: Uses deprecated version of python
2020-09-15 audio/ardour5: Uses deprecated version of python
2020-09-15 audio/cplay: Uses deprecated version of python
2020-09-15 audio/cpp-xmms2: Uses deprecated version of python
2020-09-15 audio/p5-xmms2: Uses deprecated version of python
2020-09-15 biology/haplohseq: Uses deprecated version of python
2020-09-15 biology/tophat: Uses deprecated version of python
2020-09-15 chinese/ibus-array: Uses deprecated version of python
2020-09-15 comms/congruity: Uses deprecated version of python
2020-09-15 comms/libbtbb: Uses deprecated version of python
2020-09-15 comms/quisk: Uses deprecated version of python
2020-09-15 databases/mtools-mongodb: Uses deprecated version of python
2020-09-15 databases/mydbf2mysql: Uses deprecated version of python
2020-09-15 databases/ntdb: Uses deprecated version of python
2020-09-15 databases/pgloader: Uses deprecated version of python
2020-09-15 databases/pgtune: Uses deprecated version of python
2020-09-15 databases/postgresql-libpqxx3: Uses deprecated version of python
2020-09-15 databases/postgresql-libpqxx4: Uses deprecated version of python
2020-09-15 databases/py-sqlite3dbm: Uses deprecated version of python
2020-09-15 databases/pydbx: Uses deprecated version of python
2020-09-15 databases/pyspatialite: Uses deprecated version of python
2020-09-15 deskutils/ljcharm: Uses deprecated version of python
2020-09-15 deskutils/mat: Uses deprecated version of python
2020-09-15 devel/aap: Uses deprecated version of python
2020-09-15 devel/apr2: Uses deprecated version of python
2020-09-15 devel/bbfreeze-loader: Uses deprecated version of python
2020-09-15 devel/bicyclerepair: Uses deprecated version of python
2020-09-15 devel/bzrtools: Uses deprecated version of python
2020-09-15 devel/codeville: Uses deprecated version of python
2020-09-15 devel/cvs2svn: Uses deprecated version of python
2020-09-15 devel/cx_Freeze: Uses deprecated version of python
2020-09-15 devel/euca2ools: Uses deprecated version of python
2020-09-15 devel/evolution-gconf-tools: Uses deprecated version of python
2020-09-15 devel/git-bzr-ng: Uses deprecated version of python
2020-09-15 devel/git-cvs: Uses deprecated version of python
2020-09-15 devel/git-remote-hg: Uses deprecated version of python
2020-09-15 devel/grumpy: Uses deprecated version of python
2020-09-15 devel/hg-git: Uses deprecated version of python
2020-09-15 devel/libnxt: Uses deprecated version of python
2020-09-15 devel/libredblack: Uses deprecated version of python
2020-09-15 devel/llvm-cheri: Uses deprecated version of python
2020-09-15 devel/phpsh: Uses deprecated version of python
2020-09-15 devel/py-backports.shutil_which: Uses deprecated version of python
2020-09-15 devel/py-notify: Uses deprecated version of python
2020-09-15 devel/py-pybloomfiltermmap: Uses deprecated version of python
2020-09-15 devel/py-qserve: Uses deprecated version of python
2020-09-15 devel/py-subvertpy: Uses deprecated version of python
2020-09-15 devel/py_static_check: Uses deprecated version of python
2020-09-15 devel/pyst: Uses deprecated version of python
2020-09-15 devel/runsnakerun: Uses deprecated version of python
2020-09-15 devel/tailor: Uses deprecated version of python
2020-09-15 devel/uatraits: Uses deprecated version of python
2020-09-15 dns/nsec3walker: Uses deprecated version of python
2020-09-15 dns/sshfp: Uses deprecated version of python
2020-09-15 editors/medit: Uses deprecated version of python
2020-09-15 emulators/dynagen: Uses deprecated version of python
2020-09-15 emulators/wxmupen64plus: Uses deprecated version of python
2020-09-15 games/diameter: Uses deprecated version of python
2020-09-15 games/kiki: Uses deprecated version of python
2020-09-15 games/lightyears: Uses deprecated version of python
2020-09-15 games/outerspace: Uses deprecated version of python
2020-09-15 games/pachi-game-engine: Uses deprecated version of python
2020-09-15 graphics/caffe: Uses deprecated version of python
2020-09-15 graphics/cloudcompare: Uses deprecated version of python
2020-09-15 graphics/kudu: Uses deprecated version of python
2020-09-15 graphics/pecomato: Uses deprecated version of python
2020-09-15 graphics/py-editobj: Uses deprecated version of python
2020-09-15 graphics/py-mayavi: Uses deprecated version of python
2020-09-15 graphics/pymorph: Uses deprecated version of python
2020-09-15 graphics/tilecache: Uses deprecated version of python
2020-09-15 graphics/uniconvertor: Uses deprecated version of python
2020-09-15 japanese/mailman: Uses deprecated version of python
2020-09-15 java/eclipse-pydev: Uses deprecated version of python
2020-09-15 lang/cdent: Uses deprecated version of python
2020-09-15 lang/julia06: Uses deprecated version of python
2020-09-15 lang/julia07: Uses deprecated version of python
2020-09-15 lang/julia11: Uses deprecated version of python
2020-09-15 lang/tinypy: Uses deprecated version of python
2020-09-15 mail/cleanup-maildir: Uses deprecated version of python
2020-09-15 mail/courier-pythonfilter: Uses deprecated version of python
2020-09-15 mail/getmail: Uses deprecated version of python
2020-09-15 mail/muttils: Uses deprecated version of python
2020-09-15 mail/nohtml: Uses deprecated version of python
2020-09-15 mail/offlineimap: Uses deprecated version of python
2020-09-15 mail/openemm2015: Uses deprecated version of python
2020-09-15 math/blitz++: Uses deprecated version of python
2020-09-15 math/openfst: Uses deprecated version of python
2020-09-15 math/py-fpconst: Uses deprecated version of python
2020-09-15 misc/hb: Uses deprecated version of python
2020-09-15 misc/mtail: Uses deprecated version of python
2020-09-15 misc/wotsap: Uses deprecated version of python
2020-09-15 multimedia/freevo: Uses deprecated version of python
2020-09-15 multimedia/quodlibet: Uses deprecated version of python
2020-09-15 multimedia/tovid: Uses deprecated version of python
2020-09-15 net/ceph13: Uses deprecated version of python
2020-09-15 net/cloud-init-azure: Uses deprecated version of python
2020-09-15 net/exabgp: Uses deprecated version of python
2020-09-15 net/exaddos: Uses deprecated version of python
2020-09-15 net/fb: Uses deprecated version of python
2020-09-15 net/flent: Uses deprecated version of python
2020-09-15 net/flowgrep: Uses deprecated version of python
2020-09-15 net/googlecl: Uses deprecated version of python
2020-09-15 net/mininet: Uses deprecated version of python
2020-09-15 net/nfs-ganesha: Uses deprecated version of python
2020-09-15 net/opensips: Uses deprecated version of python
2020-09-15 net/py-python-ntlm: Uses deprecated version of python
2020-09-15 net/splatd: Uses deprecated version of python
2020-09-15 net-im/centerim-devel: Uses deprecated version of python
2020-09-15 net-im/fugu: Uses deprecated version of python
2020-09-15 net-im/proxy65: Uses deprecated version of python
2020-09-15 net-mgmt/crmsh: Uses deprecated version of python
2020-09-15 net-mgmt/librenms-agent: Uses deprecated version of python
2020-09-15 net-p2p/couchpotato: Uses deprecated version of python
2020-09-15 news/rawdog: Uses deprecated version of python
2020-09-15 ports-mgmt/portell: Uses deprecated version of python
2020-09-15 print/biblio-py: Uses deprecated version of python
2020-09-15 science/brian: Uses deprecated version of python
2020-09-15 science/paraview: Uses deprecated version of python
2020-09-15 security/arm: Uses deprecated version of python
2020-09-15 security/ismtp: Uses deprecated version of python
2020-09-15 security/py-halberd: Uses deprecated version of python
2020-09-15 security/switzerland: Uses deprecated version of python
2020-09-15 security/tsshbatch: Uses deprecated version of python
2020-09-15 shells/lshell: Uses deprecated version of python
2020-09-15 sysutils/abck: Uses deprecated version of python
2020-09-15 sysutils/condor: Uses deprecated version of python
2020-09-15 sysutils/farbot: Uses deprecated version of python
2020-09-15 sysutils/fusefs-wikipediafs: Uses deprecated version of python
2020-09-15 sysutils/heartbeat: Uses deprecated version of python
2020-09-15 sysutils/isomd5sum: Uses deprecated version of python
2020-09-15 sysutils/py-stdiff: Uses deprecated version of python
2020-09-15 sysutils/tren: Uses deprecated version of python
2020-09-15 textproc/doclifter: Uses deprecated version of python
2020-09-15 textproc/ibus-el: Uses deprecated version of python
2020-09-15 textproc/p5-WWW-Google-SiteMap: Deprecated upstream, see textproc/p5-Search-Sitemap
2020-09-15 textproc/plover: Uses deprecated version of python
2020-09-15 textproc/py-esmre: Uses deprecated version of python
2020-09-15 textproc/py-libxslt: Uses deprecated version of python
2020-09-15 textproc/py-pdfminer: Uses deprecated version of python
2020-09-15 textproc/translate-toolkit: Uses deprecated version of python
2020-09-15 www/bluefish: Uses deprecated version of python
2020-09-15 www/calendarserver: Uses deprecated version of python
2020-09-15 www/geeknote: Uses deprecated version of python
2020-09-15 www/go-appengine-sdk: Uses deprecated version of python
2020-09-15 www/google-appengine: Uses deprecated version of python
2020-09-15 www/libhpack: Uses deprecated version of python
2020-09-15 www/mkapachepw: Uses deprecated version of python
2020-09-15 www/mod_pagespeed: Uses deprecated version of python
2020-09-15 www/mod_python35: Uses deprecated version of python
2020-09-15 www/py-qp: Uses deprecated version of python
2020-09-15 www/py-url: Uses deprecated version of python
2020-09-15 www/pyblosxom: Uses deprecated version of python
2020-09-15 www/pyjamas: Uses deprecated version of python
2020-09-15 www/roundup: Uses deprecated version of python
2020-09-15 www/varnish-libvmod-awsrest: Uses deprecated version of python
2020-09-15 www/waccess: Uses deprecated version of python
2020-09-15 www/wadcomblog: Uses deprecated version of python
2020-09-15 www/webcheck: Uses deprecated version of python
2020-09-15 www/woof: Uses deprecated version of python
2020-09-15 x11-drivers/xf86-video-qxl: uses deprecated version of python
2020-09-15 x11-fm/twander: Uses deprecated version of python
2020-09-15 x11-wm/compizconfig-python: Uses deprecated version of python
2020-09-15 x11-wm/fvwm-crystal: Uses deprecated version of python
Notes:
svn path=/head/; revision=548980
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2020-08-26 audio/timidity++-tcltk: Broken for more than 6 months
2020-08-26 biology/pbcopper: Broken for more than 6 months
2020-08-26 devel/ace: Broken for more than 6 months
2020-08-26 devel/bin86: Broken for more than 6 months
2020-08-26 devel/erlang-oserl: Broken for more than 6 months
2020-08-20 emulators/qemu40: Please consider using qemu or qemu41
2020-08-26 games/linux-darwinia-demo: Broken for more than 6 months
2020-08-26 games/linux-defcon: Broken for more than 6 months
2020-08-26 games/linux-uplink-demo: Broken for more than 6 months
2020-08-26 games/xevil: Broken for more than 6 months
2020-08-26 games/xminesweep: Broken for more than 6 months
2020-08-26 graphics/backfract: Broken for more than 6 months
2020-08-26 japanese/kanjipad: Broken for more than 6 months
2020-08-26 japanese/xdtp: Broken for more than 6 months
2020-08-26 korean/hpscat: Broken for more than 6 months
2020-08-26 math/barvinok: Broken for more than 6 months
2020-08-26 math/openmesh: Broken for more than 6 months
2020-08-26 math/rehearse: Broken for more than 6 months
2020-08-26 net/hinfo: Broken for more than 6 months
2020-08-26 science/fleur: Broken for more than 6 months
2020-08-26 science/lm: Broken for more than 6 months
2020-08-26 security/ddos_scan: Broken for more than 6 months
2020-08-26 security/gag: Broken for more than 6 months
2020-08-26 security/py-keystone: Broken for more than 6 months
2020-08-26 sysutils/mono-kmod: mastersite disappeared, unfetchable
2020-08-26 x11-themes/gtk-cleanice-engine: Broken for more than 6 months
2020-08-26 x11-wm/aewm: Broken for more than 6 months
Notes:
svn path=/head/; revision=546333
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2020-08-15 archivers/py-backports.lzma: Uses deprecated version of python
2020-08-15 archivers/py-bup: Uses deprecated version of python
2020-08-15 archivers/py-librtfcomp: Uses deprecated version of python
2020-08-15 audio/blop-lv2: Uses deprecated version of python
2020-08-15 audio/bs2b-lv2: Uses deprecated version of python
2020-08-15 audio/py-gmusicproxy: Uses deprecated version of python
2020-08-15 audio/py-karaoke: Uses deprecated version of python
2020-08-15 audio/py-openal: Uses deprecated version of python
2020-08-15 audio/py-py-jack: Uses deprecated version of python
2020-08-15 audio/py-xmms2: Uses deprecated version of python
2020-08-15 audio/triceratops-lv2: Uses deprecated version of python
2020-08-15 biology/py-biom-format: Uses deprecated version of python
2020-08-15 comms/py-bulksms: Uses deprecated version of python
2020-08-15 comms/py-gammu: Uses deprecated version of python
2020-08-15 databases/py-geoalchemy: Uses deprecated version of python
2020-08-15 databases/py-htsql-mysql: Uses deprecated version of python
2020-08-15 databases/py-htsql-pgsql: Uses deprecated version of python
2020-08-15 databases/py-mysql2pgsql: Uses deprecated version of python
2020-08-15 databases/py-oursql: Uses deprecated version of python
2020-08-15 databases/py-pyPgSQL: Uses deprecated version of python
2020-08-15 databases/py-pyhs: Uses deprecated version of python
2020-08-15 databases/py-pytc: Uses deprecated version of python
2020-08-15 databases/py-riak: Uses deprecated version of python
2020-08-15 databases/py-umemcache: Uses deprecated version of python
2020-08-15 devel/py-Breve: Uses deprecated version of python
2020-08-15 devel/py-PyODE: Uses deprecated version of python
2020-08-15 devel/py-akismet: Uses deprecated version of python
2020-08-15 devel/py-aspects: Uses deprecated version of python
2020-08-15 devel/py-backports.tempfile: Uses deprecated version of python
2020-08-15 devel/py-backports.weakref: Uses deprecated version of python
2020-08-15 devel/py-cfgparse: Uses deprecated version of python
2020-08-15 devel/py-ciphon: Uses deprecated version of python
2020-08-15 devel/py-cjson: Uses deprecated version of python
2020-08-15 devel/py-clonedigger: Uses deprecated version of python
2020-08-15 devel/py-cuisine: Uses deprecated version of python
2020-08-15 devel/py-deliciousapi: Uses deprecated version of python
2020-08-15 devel/py-dialog: Uses deprecated version of python
2020-08-15 devel/py-efl: Uses deprecated version of python
2020-08-15 devel/py-ezpyinline: Uses deprecated version of python
2020-08-15 devel/py-fsm: Uses deprecated version of python
2020-08-15 devel/py-gdbgui: Uses deprecated version of python
2020-08-15 devel/py-gearman: Uses deprecated version of python
2020-08-15 devel/py-generate: Uses deprecated version of python
2020-08-15 devel/py-geotypes: Uses deprecated version of python
2020-08-15 devel/py-gitosis: Uses deprecated version of python
2020-08-15 devel/py-google-apputils: Uses deprecated version of python
2020-08-15 devel/py-hghooks: Uses deprecated version of python
2020-08-15 devel/py-instant: Uses deprecated version of python
2020-08-15 devel/py-jcc: Uses deprecated version of python
2020-08-15 devel/py-json-py: Uses deprecated version of python
2020-08-15 devel/py-json-sempai: Uses deprecated version of python
2020-08-15 devel/py-jsonlib: Uses deprecated version of python
2020-08-15 devel/py-jsonlib2: Uses deprecated version of python
2020-08-15 devel/py-jsonrpclib: Uses deprecated version of python
2020-08-15 devel/py-kayako: Uses deprecated version of python
2020-08-15 devel/py-kid: Uses deprecated version of python
2020-08-15 devel/py-kjbuckets: Uses deprecated version of python
2020-08-15 devel/py-kqueue: Uses deprecated version of python
2020-08-15 devel/py-log4py: Uses deprecated version of python
2020-08-15 devel/py-mwlib.ext: Uses deprecated version of python
2020-08-15 devel/py-mx-experimental: Uses deprecated version of python
2020-08-15 devel/py-option_merge: Uses deprecated version of python
2020-08-15 devel/py-prioritized_methods: Uses deprecated version of python
2020-08-15 devel/py-protocols: Uses deprecated version of python
2020-08-15 devel/py-ptrace: Uses deprecated version of python
2020-08-15 devel/py-pydoop: Uses deprecated version of python
2020-08-15 devel/py-pyke: Uses deprecated version of python
2020-08-15 devel/py-pymtbl: Uses deprecated version of python
2020-08-15 devel/py-pyshapelib: Uses deprecated version of python
2020-08-15 devel/py-pytemplate: Uses deprecated version of python
2020-08-15 devel/py-python2-pythondialog: Uses deprecated version of python
2020-08-15 devel/py-pyutil: Uses deprecated version of python
2020-08-15 devel/py-pyvalid: Uses deprecated version of python
2020-08-15 devel/py-pyxml2obj: Uses deprecated version of python
2020-08-15 devel/py-qpid: Uses deprecated version of python
2020-08-15 devel/py-repoze.what-pylons: Uses deprecated version of python
2020-08-15 devel/py-repoze.who-friendlyform: Uses deprecated version of python
2020-08-15 devel/py-robotframework-ride: Uses deprecated version of python
2020-08-15 devel/py-ruamel.ordereddict: Uses deprecated version of python
2020-08-15 devel/py-sanetime: Uses deprecated version of python
2020-08-15 devel/py-selectors34: Uses deprecated version of python
2020-08-15 devel/py-sqlcc: Uses deprecated version of python
2020-08-15 devel/py-statgrab: Uses deprecated version of python
2020-08-15 devel/py-tconfpy: Uses deprecated version of python
2020-08-15 devel/py-terminable_thread: Uses deprecated version of python
2020-08-15 devel/py-trace2html: Uses deprecated version of python
2020-08-15 devel/py-tvrage: Uses deprecated version of python
2020-08-15 devel/py-tw.forms: Uses deprecated version of python
2020-08-15 devel/py-uncompyle2: Uses deprecated version of python
2020-08-15 devel/py-yum-metadata-parser: Uses deprecated version of python
2020-08-15 devel/rubygem-warden127: No longer needed
2020-08-15 dns/py-dnschain: Uses deprecated version of python
2020-08-15 dns/py-idnkit2: Uses deprecated version of python
2020-08-15 games/colobot: Uses deprecated version of python
2020-08-15 games/endgame-singularity: Uses deprecated version of python
2020-08-15 games/katawa-shoujo: Uses deprecated version of RenPy
2020-08-15 games/pyfa: Uses deprecated version of python
2020-08-15 games/renpy6: Uses deprecated version of python
2020-08-15 games/solarwolf: Uses deprecated version of python
2020-08-15 games/thudboard: Uses deprecated version of python
2020-08-15 graphics/djvusmooth: Uses deprecated version of python
2020-08-15 graphics/py-glewpy: Uses deprecated version of python
2020-08-15 graphics/py-openexr: Uses deprecated version of python
2020-08-15 graphics/py-poppler: Uses deprecated version of python
2020-08-15 graphics/py-pygooglechart: Uses deprecated version of python
2020-08-15 graphics/py-sane: Uses deprecated version of python
2020-08-15 graphics/py-stltools: Uses deprecated version of python
2020-08-15 graphics/sk1: Uses deprecated version of python
2020-08-15 japanese/py-mecab: Uses deprecated version of python
2020-08-15 japanese/py-tegaki-gtk: Uses deprecated version of python
2020-08-15 lang/py-mx-base: Uses deprecated version of python
2020-08-15 mail/mailpile: Uses deprecated version of python
2020-08-15 math/py-ffc: Uses deprecated version of python
2020-08-15 math/py-fiat: Uses deprecated version of python
2020-08-15 math/py-nzmath: Uses deprecated version of python
2020-08-15 math/py-pymc: Uses deprecated version of python
2020-08-15 math/py-ufl: Uses deprecated version of python
2020-08-15 misc/py-socli: Uses deprecated version of python
2020-08-15 misc/py-yolk: Uses deprecated version of python
2020-08-15 multimedia/py-flvlib: Uses deprecated version of python
2020-08-15 net/py-gspreadsheet: Uses deprecated version of python
2020-08-15 net/py-libnet: Uses deprecated version of python
2020-08-15 net/py-netlib: Uses deprecated version of python
2020-08-15 net/py-pynmsg: Uses deprecated version of python
2020-08-15 net/py-rainbowstream: Uses deprecated version of python
2020-08-15 net/py-wolframalpha: Uses deprecated version of python
2020-08-15 net-im/empathy: Uses deprecated version of python
2020-08-15 net-im/farsight2: Uses deprecated version of python
2020-08-15 net-im/py-xmpppy: Uses deprecated version of python
2020-08-15 net-im/telepathy-farsight: Uses deprecated version of python
2020-08-15 net-im/telepathy-python: Uses deprecated version of python
2020-08-15 net-im/telepathy-rakia: Uses deprecated version of python
2020-08-15 net-mgmt/py-pynsca: Uses deprecated version of python
2020-08-15 net-mgmt/py-yapsnmp: Uses deprecated version of python
2020-08-15 net-p2p/py-py2play: Uses deprecated version of python
2020-08-15 news/py-yenc: Uses deprecated version of python
2020-08-15 print/py-pyscript: Uses deprecated version of python
2020-08-15 print/py-stapler: Uses deprecated version of python
2020-08-15 print/py-trml2pdf: Uses deprecated version of python
2020-08-15 science/py-PyQuante: Uses deprecated version of python
2020-08-15 science/py-mlpy: Uses deprecated version of python
2020-08-15 science/py-ws2300: Uses deprecated version of python
2020-08-15 security/py-PF: Uses deprecated version of python
2020-08-15 security/py-cracklib: Uses deprecated version of python
2020-08-15 security/py-fteproxy: Uses deprecated version of python
2020-08-15 security/py-onetime: Uses deprecated version of python
2020-08-15 security/py-pydeep: Uses deprecated version of python
2020-08-15 security/py-slowaes: Uses deprecated version of python
2020-08-15 security/py-sslstrip: Uses deprecated version of python
2020-08-15 security/py-volatility: Uses deprecated version of python
2020-08-15 sysutils/py-analyzemft: Uses deprecated version of python
2020-08-15 sysutils/py-cdmi: Uses deprecated version of python
2020-08-15 sysutils/py-ezjailremote: Uses deprecated version of python
2020-08-15 sysutils/py-gmailfs-fuse: Uses deprecated version of python
2020-08-15 sysutils/py-ploy_ec2: Uses deprecated version of python
2020-08-15 sysutils/py-ploy_fabric: Uses deprecated version of python
2020-08-15 sysutils/py-scriptine: Uses deprecated version of python
2020-08-15 sysutils/py-superlance: Uses deprecated version of python
2020-08-15 textproc/py-bugzillatools: Uses deprecated version of python
2020-08-15 textproc/py-elib.intl: Uses deprecated version of python
2020-08-15 textproc/py-errorhandler: Uses deprecated version of python
2020-08-15 textproc/py-hyperestraier-python: Uses deprecated version of python
2020-08-15 textproc/py-pyes: Uses deprecated version of python
2020-08-15 textproc/py-pyhwp: Uses deprecated version of python
2020-08-15 textproc/py-sphinx_numfig: Uses deprecated version of python
2020-08-15 www/py-HTMLgen: Uses deprecated version of python
2020-08-15 www/py-albatross: Uses deprecated version of python
2020-08-15 www/py-amf: Uses deprecated version of python
2020-08-15 www/py-apachelog: Uses deprecated version of python
2020-08-15 www/py-aws-requests-auth: Uses deprecated version of python
2020-08-15 www/py-clientform: Uses deprecated version of python
2020-08-15 www/py-django-appmedia: Uses deprecated version of python
2020-08-15 www/py-django-evolution: Uses deprecated version of python
2020-08-15 www/py-fedex: Uses deprecated version of python
2020-08-15 www/py-formalchemy: Uses deprecated version of python
2020-08-15 www/py-frappe-bench: Uses deprecated version of python
2020-08-15 www/py-funkload: Uses deprecated version of python
2020-08-15 www/py-goobook: Uses deprecated version of python
2020-08-15 www/py-poster: Uses deprecated version of python
2020-08-15 www/py-pyquery: Uses deprecated version of python
2020-08-15 www/py-pysearch: Uses deprecated version of python
2020-08-15 www/py-pywebdav: Uses deprecated version of python
2020-08-15 www/py-slimmer: Uses deprecated version of python
2020-08-15 www/py-surl: Uses deprecated version of python
2020-08-15 www/py-tmdb3: Uses deprecated version of python
2020-08-15 www/py-trello: Uses deprecated version of python
2020-08-15 www/py-uliweb: Uses deprecated version of python
2020-08-15 www/py-wsgiauth: Uses deprecated version of python
2020-08-15 x11-toolkits/py-wax: Uses deprecated version of python
2020-08-15 x11-toolkits/py-wxPython-common: Uses deprecated version of python
2020-08-15 x11-toolkits/py-wxPython28-common: Uses deprecated version of python
Notes:
svn path=/head/; revision=544927
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bio-shell, providing BioRuby Shell, is a command-line interface for BioRuby, an
open source bioinformatics library for Ruby.
This code has historically been part of the BioRuby gem, but has been split into
its own gem as part of an effort to modularize BioRuby. bio-shell and many more
plugins are available at biogems.info.
WWW: https://github.com/bioruby/bioruby-shell
Notes:
svn path=/head/; revision=543012
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bio-old-biofetch-emulator emulates Bio::Fetch object in BioRuby as if
discontinued BioRuby BioFetch server were still alive. It overrides methods and
objects in Bio::Fetch, and if the old BioRuby BioFetch server's URL is given, it
intercepts all requests and converts them into existing web services such as
TogoWS, KEGG REST API, NCBI E-Utilities, and GenomeNet(genome.jp).
WWW: https://github.com/ngoto/bioruby-old-biofetch-emulator
Notes:
svn path=/head/; revision=543011
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bio-executables is a collection of miscellaneous utilities for bioinformatics
that were formerly part of the BioRuby core ("bio" gem). Because of reducing
complexity, they were moved to this gem.
This code has historically been part of the BioRuby gem, but has been split into
its own gem as part of an effort to modularize BioRuby. bio-executables and many
more plugins are available at biogems.info.
WWW: https://github.com/bioruby/bioruby-executables
Notes:
svn path=/head/; revision=543010
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Picard is a set of command line tools for manipulating high-throughput
sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file
formats are defined in the Hts-specs repository.
Notes:
svn path=/head/; revision=538672
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Bioawk is an extension to Brian Kernighan's awk, adding the support of several
common biological data formats, including optionally gzip'ed BED, GFF, SAM,
VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few
built-in functions and an command line option to use TAB as the input/output
delimiter. When the new functionality is not used, bioawk is intended to behave
exactly the same as the original BWK awk.
Notes:
svn path=/head/; revision=537983
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The Subread package comprises a suite of software programs for processing
next-gen sequencing read data including:
Subread: a general-purpose read aligner
Subjunc: a read aligner developed for aligning RNA-seq reads
featureCounts: a software program developed for counting reads to genomic
features such as genes, exons, promoters and genomic bins.
Sublong: a long-read aligner that is designed based on seed-and-vote.
exactSNP: discovers SNPs by testing signals against local background noise.
Notes:
svn path=/head/; revision=537982
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Notes:
svn path=/head/; revision=537926
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sequencing experiments
Notes:
svn path=/head/; revision=535347
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resources for bioinformatics
Notes:
svn path=/head/; revision=535344
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into and out of pandas
Notes:
svn path=/head/; revision=535340
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Notes:
svn path=/head/; revision=535339
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Notes:
svn path=/head/; revision=535266
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- Stop providing outdated offline PDF documentation,
users are advised to use the online files instead
Notes:
svn path=/head/; revision=534852
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Adjusted for ports rescued since r534032
2020-05-05 audio/festvox-czech: Broken for more than 6 months
2020-05-05 audio/gkrellmvolume2: Broken for more than 6 months
2020-05-05 audio/mixmos: Broken for more than 6 months
2020-05-05 audio/mma: Broken for more than 6 months
2020-05-05 audio/pd-cyclone: Broken for more than 6 months
2020-05-05 audio/shorten: Broken for more than 6 months
2020-05-05 audio/taglib-sharp: Broken for more than 6 months
2020-05-05 audio/xhippo: Broken for more than 6 months
2020-05-05 biology/consed: Broken for more than 6 months
2020-05-05 biology/plinkseq: Broken for more than 6 months
2020-05-05 biology/seqtools: Broken for more than 6 months
2020-05-05 biology/t_coffee: Broken for more than 6 months
2020-05-05 biology/ugene: Broken for more than 6 months
2020-05-05 comms/ath3k-firmware: Broken for more than 6 months
2020-05-05 comms/geoid: Broken for more than 6 months
2020-05-05 comms/jerm: Broken for more than 6 months
2020-05-05 comms/yaac: Broken for more than 6 months
2020-05-05 converters/dumpasn1: Broken for more than 6 months
2020-05-05 databases/elixir-exredis: Broken for more than 6 months
2020-05-05 databases/hamsterdb: Broken for more than 6 months
2020-05-05 databases/memcacheq: Broken for more than 6 months
2020-05-05 databases/mysql++1: Broken for more than 6 months
2020-05-05 databases/mysql++3: Broken for more than 6 months
2020-05-05 databases/mysql2odbc: Broken for more than 6 months
2020-05-05 databases/mysqlidxchk: Broken for more than 6 months
2020-05-05 databases/p5-DBIx-Ease: Broken for more than 6 months
2020-05-05 databases/p5-DMOZ-ParseRDF: Broken for more than 6 months
2020-05-05 databases/pear-DoctrineORM: Broken for more than 6 months
2020-05-05 databases/pear-MDB2_Driver_mysql: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_DBQuery: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_DBTable: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_DataObject: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_MDB2: Broken for more than 6 months
2020-05-05 databases/pgagent: Broken for more than 6 months
2020-05-05 databases/useracc: Broken for more than 6 months
2020-05-05 deskutils/devd-notifier: Broken for more than 6 months
2020-05-05 deskutils/sugarcrm: Broken for more than 6 months
2020-05-05 deskutils/tine20: Broken for more than 6 months
2020-05-05 deskutils/tomboy-plugin-latex: Broken for more than 6 months
2020-05-05 deskutils/tomboy-plugin-todo: Broken for more than 6 months
2020-05-05 deskutils/wyrd: Broken for more than 6 months
2020-05-05 deskutils/xrolo: 64-bit unsupported
2020-05-05 devel/autodist: Broken for more than 6 months
2020-05-05 devel/bouml-doc: Broken for more than 6 months
2020-05-05 devel/cobf: Broken for more than 6 months
2020-05-05 devel/djgpp-crx: Broken for more than 6 months
2020-05-05 devel/elfrc: Broken for more than 6 months
2020-05-05 devel/frink: Broken for more than 6 months
2020-05-05 devel/gogland-eap: Broken for more than 6 months
2020-05-05 devel/hive: Broken for more than 6 months
2020-04-01 devel/hs-bytestring-nums: No releases since 2012
2020-05-05 devel/iz: Broken for more than 6 months
2020-05-05 devel/jfrog-cli: Broken for more than 6 months
2020-05-05 devel/libcfg: Broken for more than 6 months
2020-05-05 devel/libdispatch: Broken for more than 6 months
2020-05-05 devel/libjson++: Broken for more than 6 months
2020-05-05 devel/libmonetra: Broken for more than 6 months
2020-05-05 devel/libol: Broken for more than 6 months
2020-05-05 devel/libserver: Broken for more than 6 months
2020-05-05 devel/lua-MessagePack: Broken for more than 6 months
2020-05-05 devel/mercurialeclipse: Broken for more than 6 months
2020-05-05 devel/mime: Broken for more than 6 months
2020-05-05 devel/motor: Broken for more than 6 months
2020-05-05 devel/mq4cpp: Broken for more than 6 months
2020-05-05 devel/myrepos: Broken for more than 6 months
2020-05-05 devel/notify-sharp: Broken for more than 6 months
2020-05-05 devel/oozie: Broken for more than 6 months
2020-05-05 devel/p5-Cdk: Broken for more than 6 months
2020-05-05 devel/p5-Data-Average: Broken for more than 6 months
2020-05-05 devel/p5-Range-String: Broken for more than 6 months
2020-05-05 devel/p5-Shape: Broken for more than 6 months
2020-05-05 devel/pear-PHP_CodeBrowser: Broken for more than 6 months
2020-05-05 devel/pear-PHP_Depend: Broken for more than 6 months
2020-05-05 devel/pear-PHP_PMD: Broken for more than 6 months
2020-05-05 devel/pear-TheSeer_phpDox: Broken for more than 6 months
2020-05-05 devel/picp: Broken for more than 6 months
2020-05-05 devel/pig: Broken for more than 6 months
2020-05-05 devel/pty: Broken for more than 6 months
2020-05-05 devel/py-libiocage: Broken for more than 6 months
2020-05-05 devel/py-lock_file: Broken for more than 6 months
2020-05-05 devel/py-pyev: Broken for more than 6 months
2020-05-05 devel/rpm-spec-mode.el: Broken for more than 6 months
2020-05-05 devel/simple_components: Broken for more than 6 months
2020-05-05 devel/tcloo: Tcl/Tk 8.5 is nearing EOL, please consider porting to Tcl/Tk 8.6
2020-05-05 devel/tkmerge: Broken for more than 6 months
2020-05-05 devel/toh: Broken for more than 6 months
2020-05-05 devel/visualparadigm: Broken for more than 6 months
2020-05-05 dns/autotrust: Broken for more than 6 months
2020-05-05 dns/gdnsd: Broken for more than 6 months
2020-05-05 dns/p5-Stanford-DNSserver: Broken for more than 6 months
2020-05-05 dns/zonecheck: Broken for more than 6 months
2020-05-05 editors/omegaT: Broken for more than 6 months
2020-05-05 finance/cbb: Broken for more than 6 months
2020-05-05 ftp/llnlxdir: Broken for more than 6 months
2020-05-05 ftp/llnlxftp: Broken for more than 6 months
2020-05-05 games/adom: Broken for more than 6 months
2020-05-05 games/bsdrain: Broken for more than 6 months
2020-05-05 games/bunnysay: Broken for more than 6 months
2020-05-05 games/castlevox: Broken for more than 6 months
2020-05-05 games/gnarr: Broken for more than 6 months
2020-05-05 games/hohlin: Broken for more than 6 months
2020-05-05 games/hoichess: Broken for more than 6 months
2020-05-05 games/kajaani-kombat: Broken for more than 6 months
2020-05-05 games/linux-enemyterritory-jaymod-21: Broken for more than 6 months
2020-05-05 games/linux-enemyterritory-omni-bot: Broken for more than 6 months
2020-05-05 games/linux-enemyterritory-omni-bot-0660: Broken for more than 6 months
2020-05-05 games/nadar: Broken for more than 6 months
2020-05-05 games/nxengine: Broken for more than 6 months
2020-05-05 games/oneko: Broken for more than 6 months
2020-05-05 games/seahaven: Broken for more than 6 months
2020-05-05 games/sudoku_solver: Broken for more than 6 months
2020-05-05 games/tetrons: Broken for more than 6 months
2020-05-05 games/xpenguins: Broken for more than 6 months
2020-05-05 games/xvmahjongg: 64-bit unsupported
2020-05-05 games/xvmines: 64-bit unsupported
2020-05-05 graphics/EZWGL: Broken for more than 6 months
2020-05-05 graphics/kix-kmod: Broken for more than 6 months
2020-05-05 graphics/mhgui: Broken for more than 6 months
2020-05-05 graphics/mmrecover: Broken for more than 6 months
2020-05-05 hungarian/hu-phone: Broken for more than 6 months
2020-05-05 hungarian/hu-zipcodes: Broken for more than 6 months
2020-05-05 irc/charybdis: Broken for more than 6 months
2020-05-05 irc/fisg: Broken for more than 6 months
2020-05-05 irc/ircd-ru: Broken for more than 6 months
2020-05-05 irc/ircservices: Broken for more than 6 months
2020-05-05 irc/nethirc: Broken for more than 6 months
2020-05-05 irc/ratbox-services: Broken for more than 6 months
2020-05-05 irc/roxirc: Broken for more than 6 months
2020-05-05 japanese/jstrings: Broken for more than 6 months
2020-05-05 japanese/mg: Broken for more than 6 months
2020-05-05 japanese/ming: Broken for more than 6 months
2020-05-05 japanese/t2ps: Broken for more than 6 months
2020-05-05 java/castor: Broken for more than 6 months
2020-05-05 java/eclipse-windowbuilder: Broken for more than 6 months
2020-05-05 java/jdbcpool: Broken for more than 6 months
2020-05-05 java/jomp: Broken for more than 6 months
2020-05-05 java/langspec: Broken for more than 6 months
2020-05-05 java/xdoclet: Broken for more than 6 months
2020-05-05 korean/xpdf: Broken for more than 6 months
2020-05-05 lang/afnix: Broken for more than 6 months
2020-05-05 lang/elan: Broken for more than 6 months
2020-05-05 lang/gnatcross-aarch64: Broken for more than 6 months
2020-05-05 lang/hope: Broken for more than 6 months
2020-05-05 lang/hugs: Broken for more than 6 months
2020-05-05 lang/ici: Broken for more than 6 months
2020-05-05 lang/icon: Broken for more than 6 months
2020-05-05 lang/newlisp-devel: Broken for more than 6 months
2020-05-05 lang/ohugs: Broken for more than 6 months
2020-05-05 lang/opendylan: Broken for more than 6 months
2020-05-05 lang/phc: Broken for more than 6 months
2020-05-05 lang/starlogo: Broken for more than 6 months
2020-05-05 lang/yap: Broken for more than 6 months
2020-05-05 lang/yap-devel: Broken for more than 6 months
2020-05-05 mail/chk4mail: Broken for more than 6 months
2020-05-05 mail/librfc822: Broken for more than 6 months
2020-05-05 mail/mailmgr: Broken for more than 6 months
2020-05-05 mail/mreport: Broken for more than 6 months
2020-05-05 mail/msgconvert: Broken for more than 6 months
2020-05-05 mail/nullpop: Broken for more than 6 months
2020-05-05 mail/p5-Mail-MailStats: Broken for more than 6 months
2020-05-05 mail/poppassd: Broken for more than 6 months
2020-05-05 mail/prayer: Broken for more than 6 months
2020-05-05 mail/py-cyruslib: Broken for more than 6 months
2020-05-05 mail/qmail-auditor: Broken for more than 6 months
2020-05-05 mail/qmailmrtg7: Broken for more than 6 months
2020-05-05 mail/qmqtool: Broken for more than 6 months
2020-05-05 mail/relaydb: Broken for more than 6 months
2020-05-05 mail/rftp: Broken for more than 6 months
2020-05-05 mail/smtp-gated: Broken for more than 6 months
2020-05-05 mail/spamoracle: Broken for more than 6 months
2020-05-05 math/calctool: 64-bit unsupported
2020-05-05 math/diehard: Broken for more than 6 months
2020-05-05 math/e: Broken for more than 6 months
2020-05-05 math/entropy: Broken for more than 6 months
2020-05-05 math/liblbfgs: Broken for more than 6 months
2020-05-05 math/libtsnnls: Broken for more than 6 months
2020-05-05 math/ltl: Broken for more than 6 months
2020-05-05 math/naturalmath: Broken for more than 6 months
2020-05-05 math/proofgeneral: Broken for more than 6 months
2020-05-05 math/py-basemap-data: Broken for more than 6 months
2020-05-05 math/py-igakit: Broken for more than 6 months
2020-05-05 math/py-rapi: Broken for more than 6 months
2020-05-05 math/sfst: Broken for more than 6 months
2020-05-05 math/truthtable: Broken for more than 6 months
2020-05-05 math/wingz3: Broken for more than 6 months
2020-05-05 math/x12arima: Broken for more than 6 months
2020-05-05 math/xppaut: Broken for more than 6 months
2020-05-05 misc/achievo: Broken for more than 6 months
2020-05-05 misc/auto-multiple-choice: Broken for more than 6 months
2020-05-05 misc/display: Broken for more than 6 months
2020-05-05 misc/esniper: Broken for more than 6 months
2020-05-05 misc/free42-skins: Broken for more than 6 months
2020-05-05 misc/libisocodes: Broken for more than 6 months
2020-05-05 misc/loop: Broken for more than 6 months
2020-05-05 misc/p5-Norge: Broken for more than 6 months
2020-05-05 misc/pantry: Broken for more than 6 months
2020-05-05 misc/phraze: Broken for more than 6 months
2020-05-05 misc/podsleuth: Broken for more than 6 months
2020-05-05 misc/py-osd: Broken for more than 6 months
2020-05-05 misc/rfc: Broken for more than 6 months
2020-05-05 misc/spamcalc: Broken for more than 6 months
2020-05-05 misc/us-zipcodes: Broken for more than 6 months
2020-05-05 misc/xtypo: Broken for more than 6 months
2020-05-05 misc/yaunc: Broken for more than 6 months
2020-05-05 multimedia/clipgrab: Broken for more than 6 months
2020-05-05 multimedia/libsmacker: Broken for more than 6 months
2020-05-05 multimedia/lxdvdrip: Broken for more than 6 months
2020-05-05 multimedia/mjpg-streamer: Broken for more than 6 months
2020-05-05 multimedia/vcdpad: Broken for more than 6 months
2020-05-05 net/erlang-xmlrpc: Broken for more than 6 months
2020-05-05 net/etrace: Broken for more than 6 months
2020-05-05 net/fonulator: Broken for more than 6 months
2020-05-05 net/gkrellmwireless2: Broken for more than 6 months
2020-05-05 net/howl: Broken for more than 6 months
2020-05-05 net/libp0f: Broken for more than 6 months
2020-05-05 net/libsocket++: Broken for more than 6 months
2020-05-05 net/ltm: Broken for more than 6 months
2020-05-05 net/lvwimax: Broken for more than 6 months
2020-05-05 net/mono-zeroconf: Broken for more than 6 months
2020-05-05 net/nph: Broken for more than 6 months
2020-05-05 net/p5-Net-RawSock: Broken for more than 6 months
2020-05-05 net/passlogd: Broken for more than 6 months
2020-05-05 net/phamm: Broken for more than 6 months
2020-05-05 net/pim6-tools: Broken for more than 6 months
2020-05-05 net/pim6dd: Broken for more than 6 months
2020-05-05 net/pim6sd: Broken for more than 6 months
2020-05-05 net/proxy-connect: Broken for more than 6 months
2020-05-05 net/rtpbreak: Broken for more than 6 months
2020-05-05 net/s3ql: Broken for more than 6 months
2020-05-05 net/scnc: Broken for more than 6 months
2020-05-05 net/sip_scenario: Broken for more than 6 months
2020-05-05 net/slurm: Broken for more than 6 months
2020-05-05 net/ssmping: Broken for more than 6 months
2020-05-05 net/tcpdstat: Broken for more than 6 months
2020-05-05 net/uplog: Broken for more than 6 months
2020-05-05 net/vblade: Broken for more than 6 months
2020-05-05 net/wizd: Broken for more than 6 months
2020-05-05 net/wmnetload: Broken for more than 6 months
2020-05-05 net/wmnetmon: Broken for more than 6 months
2020-05-05 net/wmpiki: Broken for more than 6 months
2020-05-05 net/xipmsg: Broken for more than 6 months
2020-05-05 net-im/chattahoochie: Broken for more than 6 months
2020-05-05 net-im/jitsi: Broken for more than 6 months
2020-05-05 net-im/mu-conference: Broken for more than 6 months
2020-05-05 net-im/p5-Jabber-Connection: Broken for more than 6 months
2020-05-05 net-im/p5-Net-ICQ2000: Broken for more than 6 months
2020-05-05 net-im/pidgin-guifications: Broken for more than 6 months
2020-05-05 net-im/pidgin-osd: Broken for more than 6 months
2020-05-05 net-im/yoono: Broken for more than 6 months
2020-05-05 net-mgmt/arpalert: Broken for more than 6 months
2020-05-05 net-mgmt/nagios-check_memcached_paranoid: Broken for more than 6 months
2020-05-05 net-mgmt/netwox: Broken for more than 6 months
2020-05-05 net-mgmt/nstreams: Broken for more than 6 months
2020-05-05 net-mgmt/p5-GRNOC-Config: Broken for more than 6 months
2020-05-05 net-mgmt/p5-GRNOC-TL1: Broken for more than 6 months
2020-05-05 net-mgmt/scli: Broken for more than 6 months
2020-05-05 net-mgmt/snmp++: Broken for more than 6 months
2020-05-05 net-mgmt/victorops-nagios: Broken for more than 6 months
2020-05-05 net-p2p/libpdtp: Broken for more than 6 months
2020-05-05 net-p2p/squall: Broken for more than 6 months
2020-05-05 news/crashmail: Broken for more than 6 months
2020-05-05 news/sn: Broken for more than 6 months
2020-05-05 news/xrn: Broken for more than 6 months
2020-05-05 ports-mgmt/managepkg: Broken for more than 6 months
2020-05-05 portuguese/irpf-pt_BR: Broken for more than 6 months
2020-05-05 print/foxitreader: Broken for more than 6 months
2020-05-05 print/pdfcube: Broken for more than 6 months
2020-05-05 print/pmw: Broken for more than 6 months
2020-05-05 print/rprint: Broken for more than 6 months
2020-05-05 russian/p5-cyrillic: Broken for more than 6 months
2020-05-05 russian/tidyup-mail: Broken for more than 6 months
2020-05-05 science/abinit: Broken for more than 6 months
2020-05-05 science/atom: Broken for more than 6 months
2020-05-05 science/cp2k: Broken for more than 6 months
2020-05-05 science/esys-particle: Broken for more than 6 months
2020-05-05 science/openmx: Broken for more than 6 months
2020-05-05 science/p5-Geo-ReadGRIB: Broken for more than 6 months
2020-05-05 science/py-tensorflow-estimator: Broken for more than 6 months
2020-05-05 security/firewalk: Broken for more than 6 months
2020-05-05 security/hmap: Broken for more than 6 months
2020-05-05 security/ipfcount: Broken for more than 6 months
2020-05-05 security/libbf: Broken for more than 6 months
2020-05-05 security/log2timeline: Broken for more than 6 months
2020-05-05 security/opencdk: Broken for more than 6 months
2020-05-05 security/pad: Broken for more than 6 months
2020-05-05 security/pam_fprint: Broken for more than 6 months
2020-05-05 security/pam_per_user: Broken for more than 6 months
2020-05-05 security/razorback-dispatcher: Broken for more than 6 months
2020-05-05 security/ruby-camellia: Broken for more than 6 months
2020-05-05 security/scanhill: Broken for more than 6 months
2020-05-05 security/sinfp: Broken for more than 6 months
2020-05-05 security/ssh_askpass_gtk2: Broken for more than 6 months
2020-05-05 security/subweb: Broken for more than 6 months
2020-05-05 security/unssh: Broken for more than 6 months
2020-05-05 security/xspy: Broken for more than 6 months
2020-05-05 shells/osh: Broken for more than 6 months
2020-05-05 shells/shell-include: Broken for more than 6 months
2020-05-05 sysutils/abgx360gui: Broken for more than 6 months
2020-05-05 sysutils/autojump: Broken for more than 6 months
2020-05-05 sysutils/backupchecker: Broken for more than 6 months
2020-05-05 sysutils/cdf: Broken for more than 6 months
2020-05-05 sysutils/cdls: Broken for more than 6 months
2020-05-05 sysutils/circonus-agent: Broken for more than 6 months
2020-05-05 sysutils/cloop-utils: Broken for more than 6 months
2020-05-05 sysutils/confman: Broken for more than 6 months
2020-05-05 sysutils/detach: Broken for more than 6 months
2020-05-05 sysutils/disktool: 64-bit unsupported
2020-05-05 sysutils/downtime: Broken for more than 6 months
2020-05-05 sysutils/fusefs-fusexmp_fh: Broken for more than 6 months
2020-05-05 sysutils/fusefs-gunzip: Broken for more than 6 months
2020-05-05 sysutils/goss: Broken for more than 6 months
2020-05-05 sysutils/gpte: Broken for more than 6 months
2020-05-05 sysutils/hidesvn: Broken for more than 6 months
2020-05-05 sysutils/hoz: Broken for more than 6 months
2020-05-05 sysutils/intel-qcu: Broken for more than 6 months
2020-05-05 sysutils/iogen: Broken for more than 6 months
2020-05-05 sysutils/jailctl: Broken for more than 6 months
2020-05-05 sysutils/jx: Broken for more than 6 months
2020-05-05 sysutils/linux-crashplan: Broken for more than 6 months
2020-05-05 sysutils/mkfile: Broken for more than 6 months
2020-05-05 sysutils/mpiexec: Broken for more than 6 months
2020-05-05 sysutils/nfsping: Broken for more than 6 months
2020-05-05 sysutils/phantom: Broken for more than 6 months
2020-05-05 sysutils/ptools: Broken for more than 6 months
2020-05-05 sysutils/realsync: Broken for more than 6 months
2020-05-05 sysutils/rmonitor: Broken for more than 6 months
2020-05-05 sysutils/roottail: Broken for more than 6 months
2020-05-05 sysutils/sb16config: Broken for more than 6 months
2020-05-05 sysutils/sbase: Broken for more than 6 months
2020-05-05 sysutils/setquota: Broken for more than 6 months
2020-05-05 sysutils/sortu: Broken for more than 6 months
2020-05-05 sysutils/stmpclean: Broken for more than 6 months
2020-05-05 sysutils/tmate-slave: Broken for more than 6 months
2020-05-05 sysutils/tss: Broken for more than 6 months
2020-05-05 sysutils/vstrip: Broken for more than 6 months
2020-05-05 sysutils/watchdog: Broken for more than 6 months
2020-05-05 sysutils/wmbsdbatt: Broken for more than 6 months
2020-05-05 sysutils/wmcpuload: Broken for more than 6 months
2020-05-05 sysutils/wmcube: Broken for more than 6 months
2020-05-05 sysutils/wtail: Broken for more than 6 months
2020-05-05 textproc/csv2latex: Broken for more than 6 months
2020-05-05 textproc/da-hyphen: Broken for more than 6 months
2020-05-05 textproc/glark: Broken for more than 6 months
2020-05-05 textproc/html2tex: Broken for more than 6 months
2020-05-05 textproc/htmlsection: Broken for more than 6 months
2020-05-05 textproc/kenlm: Broken for more than 6 months
2020-05-05 textproc/libguess: Broken for more than 6 months
2020-05-05 textproc/libxml++26-reference: Broken for more than 6 months
2020-05-05 textproc/no-hunspell: Broken for more than 6 months
2020-05-05 textproc/p5-MARC: Broken for more than 6 months
2020-05-05 textproc/p5-texcount: Broken for more than 6 months
2020-05-05 textproc/pcrs: Broken for more than 6 months
2020-05-05 textproc/pear-Structures_DataGrid_DataSource_RSS: Broken for more than 6 months
2020-05-05 textproc/pear-Structures_DataGrid_DataSource_XML: Broken for more than 6 months
2020-05-05 textproc/permute: Broken for more than 6 months
2020-05-05 textproc/pocketreader: Broken for more than 6 months
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2020-05-05 textproc/topic: Broken for more than 6 months
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2020-05-05 textproc/xmlprpr: Broken for more than 6 months
2020-05-05 www/ach: Broken for more than 6 months
2020-05-05 www/apache-forrest: Broken for more than 6 months
2020-05-05 www/apercu: Broken for more than 6 months
2020-05-05 www/cblog: Broken for more than 6 months
2020-05-05 www/drood: Broken for more than 6 months
2020-05-05 www/drraw: Broken for more than 6 months
2020-05-05 www/flood: Broken for more than 6 months
2020-05-05 www/grafana2: Broken for more than 6 months
2020-05-05 www/imgsizer: Broken for more than 6 months
2020-05-05 www/jdresolve: Broken for more than 6 months
2020-05-05 www/linkcheck: Broken for more than 6 months
2020-05-05 www/madsonic-standalone: Broken for more than 6 months
2020-05-05 www/mod_auth_external2: Broken for more than 6 months
2020-05-05 www/mod_chroot: Broken for more than 6 months
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2020-05-05 www/mod_tsa: Broken for more than 6 months
2020-05-05 www/mod_vhs: Broken for more than 6 months
2020-05-05 www/p5-AnyEvent-Mojo: Broken for more than 6 months
2020-05-05 www/p5-Apache-Gallery: Broken for more than 6 months
2020-05-05 www/p5-WWW-Google-Video: Broken for more than 6 months
2020-05-05 www/p5-WWW-Shorten-KUSO: Broken for more than 6 months
2020-05-05 www/p5-WWW-Shorten-isgd: Broken for more than 6 months
2020-05-05 www/photo_gallery: Broken for more than 6 months
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2020-05-05 www/py-django-profiles: Broken for more than 6 months
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2020-05-05 www/tinytinyhttpd: Broken for more than 6 months
2020-05-05 www/udmsearch: Broken for more than 6 months
2020-05-05 www/vee: Broken for more than 6 months
2020-05-05 www/webreport: Broken for more than 6 months
2020-05-05 www/webstats: Broken for more than 6 months
2020-05-05 www/www6to4: Broken for more than 6 months
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2020-05-05 x11/dmenu2: Broken for more than 6 months
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2020-05-05 x11/ipager: Broken for more than 6 months
2020-05-05 x11/keylaunch: Broken for more than 6 months
2020-05-05 x11/props: 64-bit unsupported
2020-05-05 x11/roxbg: Broken for more than 6 months
2020-05-05 x11/sisctrl: Broken for more than 6 months
2020-05-05 x11/wdm: Broken for more than 6 months
2020-05-05 x11/xaniroc: Broken for more than 6 months
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2020-05-05 x11/xnodecor: Broken for more than 6 months
2020-05-05 x11/xvattr: Broken for more than 6 months
2020-05-05 x11-clocks/tktz: Broken for more than 6 months
2020-05-05 x11-clocks/xtimer: Broken for more than 6 months
2020-05-05 x11-themes/gnome-icons-dropline-neu: Broken for more than 6 months
2020-05-05 x11-themes/gnome-icons-dropline-nou: Broken for more than 6 months
2020-05-05 x11-themes/gnome-icons-gion: Broken for more than 6 months
2020-05-05 x11-themes/gnome-icons-jini: Broken for more than 6 months
2020-05-05 x11-themes/gtk-aurora-engine: Broken for more than 6 months
2020-05-05 x11-themes/gtk-blueprint-engine: Broken for more than 6 months
2020-05-05 x11-themes/gtk-murrina-fancy-clearlooks: Broken for more than 6 months
2020-05-05 x11-themes/gtk-murrina-lightblue: Broken for more than 6 months
2020-05-05 x11-themes/gtk-murrine-themes: Broken for more than 6 months
2020-05-05 x11-themes/murrine-configurator: Broken for more than 6 months
2020-05-05 x11-themes/nimbus: Broken for more than 6 months
2020-05-05 x11-themes/openbox-themes: Broken for more than 6 months
2020-05-05 x11-themes/rezlooks: Broken for more than 6 months
2020-05-05 x11-themes/ubuntulooks: Broken for more than 6 months
2020-05-05 x11-toolkits/slingshot: 64-bit unsupported
2020-05-05 x11-toolkits/xview-clients: 64-bit unsupported
2020-05-05 x11-wm/fluxconf: Broken for more than 6 months
2020-05-05 x11-wm/ion: Broken for more than 6 months
2020-05-05 x11-wm/matwm2: Broken for more than 6 months
2020-05-05 x11-wm/nickleby: Broken for more than 6 months
2020-05-05 x11-wm/olvwm: 64-bit unsupported
2020-05-05 x11-wm/ratmenu: Broken for more than 6 months
Notes:
svn path=/head/; revision=534093
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Reversed removal, commit r471892 2018/06/07
Upgraded to 1.90 beta 6.17
PR: ports/243733
Submitted by: mzaki@e-mail.ne.jp
Notes:
svn path=/head/; revision=533993
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GCTA (Genome-wide Complex Trait Analysis) was originally designed to estimate
the proportion of phenotypic variance explained by genome- or chromosome-wide
SNPs for complex traits (the GREML method), and has subsequently extended for
many other analyses to better understand the genetic architecture of complex
traits.
Notes:
svn path=/head/; revision=531770
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Special thanks to netchild for inspiring bringing back this piece software
to ports!
Reviewed by: netchild, pi, salvadore
Differential Revision: https://reviews.freebsd.org/D24127
Notes:
svn path=/head/; revision=528886
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2020-01-27 accessibility/py-papi: Unmaintained, uses EOLed python27
2020-01-27 archivers/py-czipfile: Unmaintained, uses EOLed python27
2020-01-27 audio/boodler: Unmaintained, uses EOLed python27
2020-01-27 audio/dir2ogg: Unmaintained, uses EOLed python27
2020-01-27 audio/jokosher: Unmaintained, uses EOLed python27
2020-01-27 audio/mpdbrowser: Unmaintained, uses EOLed python27
2020-01-27 audio/nekobee: Unmaintained, uses EOLed python27
2020-01-27 audio/patchage: Unmaintained, uses EOLed python27
2020-01-27 audio/py-ao: Unmaintained, uses EOLed python27
2020-01-27 audio/py-id3: Unmaintained, uses EOLed python27
2020-01-27 audio/py-shout: Unmaintained, uses EOLed python27
2020-01-27 audio/py-speex: Unmaintained, uses EOLed python27
2020-01-27 audio/pytone: Unmaintained, uses EOLed python27
2020-01-27 audio/solfege: Unmaintained, uses EOLed python27
2020-01-27 audio/trommler: Unmaintained, uses EOLed python27
2020-01-27 benchmarks/pybench: Unmaintained, uses EOLed python27
2020-01-27 biology/pycogent: Unmaintained, uses EOLed python27
2020-01-27 biology/unanimity: Unmaintained, uses EOLed python27
2020-01-27 cad/pythoncad: Unmaintained, uses EOLed python27
2020-01-27 chinese/bg5pdf: Unmaintained, uses EOLed python27
2020-01-27 comms/py-libimobiledevice: Unmaintained, uses EOLed python27
2020-01-27 converters/py-bcode: Unmaintained, uses EOLed python27
2020-01-27 converters/py-iconv: Unmaintained, uses EOLed python27
2020-01-27 converters/py-zfec: Unmaintained, uses EOLed python27
2020-01-27 databases/gadfly: Unmaintained, uses EOLed python27
2020-01-27 databases/metakit: Unmaintained, uses EOLed python27
2020-01-27 databases/openark-kit: Unmaintained, uses EOLed python27
2020-01-27 databases/py-MySQLdb55: Unmaintained, uses EOLed python27
2020-01-27 databases/py-MySQLdb56: Unmaintained, uses EOLed python27
2020-01-27 databases/py-forgetsql: Unmaintained, uses EOLed python27
2020-01-27 databases/py-oops: Unmaintained, uses EOLed python27
2020-01-27 databases/py-rrdtool_lgpl: Unmaintained, uses EOLed python27
2020-01-27 deskutils/conkyemail: No longer maintained by upstream
2020-01-27 deskutils/cycle: Unmaintained, uses EOLed python27
2020-01-27 deskutils/everygui: Unmaintained, uses EOLed python27
2020-01-27 deskutils/ganyremote: Unmaintained, uses EOLed python27
2020-01-27 deskutils/pypanel: Unmaintained, uses EOLed python27
2020-01-27 deskutils/taskcoach: Unmaintained, uses EOLed python27
2020-01-27 deskutils/tel: Unmaintained, uses EOLed python27
2020-01-27 deskutils/tnote: Unmaintained, uses EOLed python27
2020-01-27 deskutils/vnc2flv: Unmaintained, uses EOLed python27
2020-01-27 deskutils/wammu: Unmaintained, uses EOLed python27
2020-01-27 devel/bbfreeze: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-builder: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-colo: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-externals: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-git: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-gtk: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-loom: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-pipeline: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-rewrite: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-scmproj: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-stats: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-svn: Unmaintained, uses EOLed python27
2020-01-27 devel/bzr-upload: Unmaintained, uses EOLed python27
2020-01-27 devel/ditrack: Unmaintained, uses EOLed python27
2020-01-27 devel/drpython: Unmaintained, uses EOLed python27
2020-01-27 devel/epydoc: Unmaintained, uses EOLed python27
2020-01-27 devel/fb303: Unmaintained, uses EOLed python27
2020-01-27 devel/fnorb: Unmaintained, uses EOLed python27
2020-01-27 devel/gazpacho: Unmaintained, uses EOLed python27
2020-01-27 devel/libmpsse: Unmaintained, uses EOLed python27
2020-01-27 devel/open-usp-tukubai: Unmaintained, uses EOLed python27
2020-01-27 devel/phpbt: Unmaintained, uses EOLed python27
2020-01-27 devel/py-anonfunc: Unmaintained, uses EOLed python27
2020-01-27 devel/py-bison: Unmaintained, uses EOLed python27
2020-01-27 devel/py-fortran: Unmaintained, uses EOLed python27
2020-01-27 devel/py-grouch: Unmaintained, uses EOLed python27
2020-01-27 devel/py-mwlib.rl: Unmaintained, uses EOLed python27
2020-01-27 devel/py-nagioscheck: Unmaintained, uses EOLed python27
2020-01-27 devel/py-ncurses: Unmaintained, uses EOLed python27
2020-01-27 devel/py-ocempgui: Unmaintained, uses EOLed python27
2020-01-27 devel/py-palm: Unmaintained, uses EOLed python27
2020-01-27 devel/py-pyechonest: Unmaintained, uses EOLed python27
2020-01-27 devel/py-resourcepackage: Unmaintained, uses EOLed python27
2020-01-27 devel/py-rlcompleter2: Unmaintained, uses EOLed python27
2020-01-27 devel/py-spark: Unmaintained, uses EOLed python27
2020-01-27 devel/py-xoltar-toolkit: Unmaintained, uses EOLed python27
2020-01-27 devel/py-zkpython: Unmaintained, uses EOLed python27
2020-01-27 devel/pychecker: Unmaintained, uses EOLed python27
2020-01-27 devel/pymacs: Unmaintained, uses EOLed python27
2020-01-27 devel/trac-bitten: Unmaintained, uses EOLed python27
2020-01-27 devel/wxGlade: Unmaintained, uses EOLed python27
2020-01-27 emulators/catapult: Unmaintained, uses EOLed python27
2020-01-27 emulators/dynagui: Unmaintained, uses EOLed python27
2020-01-27 finance/mybudget: Unmaintained, uses EOLed python27
2020-01-27 finance/sabernetdcs-client: Unmaintained, uses EOLed python27
2020-01-27 games/4stattack: Unmaintained, uses EOLed python27
2020-01-27 games/barbie_seahorse_adventures: Unmaintained, uses EOLed python27
2020-01-27 games/battletanks: Unmaintained, uses EOLed python27
2020-01-27 games/bombz: Unmaintained, uses EOLed python27
2020-01-27 games/bouncy: Unmaintained, uses EOLed python27
2020-01-27 games/bubbros: Unmaintained, uses EOLed python27
2020-01-27 games/childsplay: Unmaintained, uses EOLed python27
2020-01-27 games/crossfire-server: Unmaintained, uses EOLed python27
2020-01-27 games/duckmaze: Unmaintained, uses EOLed python27
2020-01-27 games/farblazer: Unmaintained, uses EOLed python27
2020-01-27 games/gbottler: Unmaintained, uses EOLed python27
2020-01-27 games/glchess: Unmaintained, uses EOLed python27
2020-01-27 games/gretools: Unmaintained, uses EOLed python27
2020-01-27 games/kye: Unmaintained, uses EOLed python27
2020-01-27 games/liquidwar: Unmaintained, uses EOLed python27
2020-01-27 games/mopesnake: Unmaintained, uses EOLed python27
2020-01-27 games/nelly: Unmaintained, uses EOLed python27
2020-01-27 games/oneisenough: Unmaintained, uses EOLed python27
2020-01-27 games/ptkei: Unmaintained, uses EOLed python27
2020-01-27 games/py-poker-eval: Unmaintained, uses EOLed python27
2020-01-27 games/pycadia: Unmaintained, uses EOLed python27
2020-01-27 games/pydance: Unmaintained, uses EOLed python27
2020-01-27 games/pysycache: Unmaintained, uses EOLed python27
2020-01-27 games/pythonchess: Unmaintained, uses EOLed python27
2020-01-27 games/pytowerdefense: Unmaintained, uses EOLed python27
2020-01-27 games/rtb: Unmaintained, uses EOLed python27
2020-01-27 games/schiff: Unmaintained, uses EOLed python27
2020-01-27 games/schwarzweiss: Unmaintained, uses EOLed python27
2020-01-27 games/secrettower: Unmaintained, uses EOLed python27
2020-01-27 games/slune: Unmaintained, uses EOLed python27
2020-01-27 games/super_mario_bros_python: Unmaintained, uses EOLed python27
2020-01-27 games/tuxfighter: Unmaintained, uses EOLed python27
2020-01-27 games/twitch: Unmaintained, uses EOLed python27
2020-01-27 games/vegastrike: Unmaintained, uses EOLed python27
2020-01-27 games/zephulor: Unmaintained, uses EOLed python27
2020-01-27 graphics/boxer: Unmaintained, uses EOLed python27
2020-01-27 graphics/electrix: Unmaintained, uses EOLed python27
2020-01-27 graphics/exact-image: Unmaintained, uses EOLed python27
2020-01-27 graphics/gnofract4d: Unmaintained, uses EOLed python27
2020-01-27 graphics/gsculpt: Unmaintained, uses EOLed python27
2020-01-27 graphics/imgtops: Unmaintained, uses EOLed python27
2020-01-27 graphics/imgv: Unmaintained, uses EOLed python27
2020-01-27 graphics/lcms-python: Unmaintained, uses EOLed python27
2020-01-27 graphics/mirage: Unmaintained, uses EOLed python27
2020-01-27 graphics/partio: Unmaintained, uses EOLed python27
2020-01-27 graphics/py-exif: Unmaintained, uses EOLed python27
2020-01-27 graphics/py-gd: Unmaintained, uses EOLed python27
2020-01-27 graphics/py-paint: Unmaintained, uses EOLed python27
2020-01-27 graphics/pygts: Unmaintained, uses EOLed python27
2020-01-27 graphics/pysvg: Unmaintained, uses EOLed python27
2020-01-27 irc/py-supybot-plugins: Unmaintained, uses EOLed python27
2020-01-27 japanese/kana-no-quiz: Unmaintained, uses EOLed python27
2020-01-27 lang/py-prolog: Unmaintained, uses EOLed python27
2020-01-27 lang/sdcc: Unmaintained, uses EOLed python27
2020-01-27 mail/archivemail: Unmaintained, uses EOLed python27
2020-01-27 mail/mailfmt: Unmaintained, uses EOLed python27
2020-01-27 mail/py-libgmail: Unmaintained, uses EOLed python27
2020-01-27 mail/py-ppolicy: Unmaintained, uses EOLed python27
2020-01-27 mail/rss2email2: Unmaintained, uses EOLed python27
2020-01-27 mail/svnmailer: Unmaintained, uses EOLed python27
2020-01-27 math/biggles: Unmaintained, uses EOLed python27
2020-01-27 math/py-gato: Unmaintained, uses EOLed python27
2020-01-27 math/py-gnuplot: Unmaintained, uses EOLed python27
2020-01-27 math/py-mathdom: Unmaintained, uses EOLed python27
2020-01-27 math/py-probstat: Unmaintained, uses EOLed python27
2020-01-27 math/py-rpy: Unmaintained, uses EOLed python27
2020-01-27 misc/gnome-osd: Unmaintained, uses EOLed python27
2020-01-27 misc/gonvert: Unmaintained, uses EOLed python27
2020-01-27 misc/metalink-editor: Unmaintained, uses EOLed python27
2020-01-27 misc/py-YABT: Unmaintained, uses EOLed python27
2020-01-27 misc/xdg-menu: Unmaintained, uses EOLed python27
2020-01-27 multimedia/devede: Unmaintained, uses EOLed python27
2020-01-27 multimedia/gdvrecv: Unmaintained, uses EOLed python27
2020-01-27 multimedia/mmpython: Unmaintained, uses EOLed python27
2020-01-27 multimedia/pymp: Unmaintained, uses EOLed python27
2020-01-27 net/gtknetcat: Unmaintained, uses EOLed python27
2020-01-27 net/ntlmaps: Unmaintained, uses EOLed python27
2020-01-27 net/polyorb: Unmaintained, uses EOLed python27
2020-01-27 net/py-zsi: Unmaintained, uses EOLed python27
2020-01-27 net/pythondirector: Unmaintained, uses EOLed python27
2020-01-27 net/sippy_b2bua: Unmaintained, uses EOLed python27
2020-01-27 net-im/py-jabber: Unmaintained, uses EOLed python27
2020-01-27 net-im/py-jabberbot: Unmaintained, uses EOLed python27
2020-01-27 net-im/py-libturpial: Unmaintained, uses EOLed python27
2020-01-27 net-im/py-xmpppy-irc: Unmaintained, uses EOLed python27
2020-01-27 net-mgmt/pdagent-integrations: Unmaintained, uses EOLed python27
2020-01-27 net-p2p/tribler: Unmaintained, uses EOLed python27
2020-01-27 news/papercut: Unmaintained, uses EOLed python27
2020-01-27 print/pkipplib: Unmaintained, uses EOLed python27
2020-01-27 print/pkpgcounter: Unmaintained, uses EOLed python27
2020-01-27 print/ttfquery: Unmaintained, uses EOLed python27
2020-01-27 science/gwyddion: Unmaintained, uses EOLed python27
2020-01-27 science/psychopy: Unmaintained, uses EOLed python27
2020-01-27 science/py-hcluster: Unmaintained, uses EOLed python27
2020-01-27 science/py-pyteomics.biolccc: Unmaintained, uses EOLed python27
2020-01-27 science/pycdf: Unmaintained, uses EOLed python27
2020-01-27 security/blindelephant: Unmaintained, uses EOLed python27
2020-01-27 security/cfv: Unmaintained, uses EOLed python27
2020-01-27 security/fsh: Unmaintained, uses EOLed python27
2020-01-27 security/gcipher: Unmaintained, uses EOLed python27
Notes:
svn path=/head/; revision=524263
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Bio::Variation::* provides BioPerl variation-related functionality.
WWW: https://metacpan.org/release/Bio-Variation
Notes:
svn path=/head/; revision=519320
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Bio::DB::NCBIHelper provides a single place to setup some common methods for
querying NCBI web databases. This module just centralizes the methods for
constructing a URL for querying NCBI GenBank and NCBI GenPept and the common
HTML stripping done in postprocess_data().
WWW: https://metacpan.org/release/Bio-DB-NCBIHelper
Notes:
svn path=/head/; revision=519319
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Bio::DB::EMBL allows the dynamic retrieval of sequence objects Bio::Seq from the
EMBL database using the dbfetch script at EBI.
In order to make changes transparent we have host type (currently only ebi) and
location (defaults to ebi) separated out. This allows later additions of more
servers in different geographical locations.
The functionality of this module is inherited from Bio::DB::DBFetch which
implements Bio::DB::WebDBSeqI.
WWW: https://metacpan.org/release/Bio-DB-EMBL
Notes:
svn path=/head/; revision=519318
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2019-10-16 archivers/freetar: Unfetchable, unmaintained
2019-10-16 archivers/hffzip: Unfetchable, unmaintained
2019-10-16 archivers/hpack.non-usa.only: Unfetchable, unmaintained
2019-10-16 archivers/untar: Unfetchable, unmaintained
2019-10-16 astro/gpsdrive: Unfetchable, unmaintained
2019-10-16 astro/planets: Unfetchable, unmaintained
2019-10-16 audio/ascd: Unfetchable, unmaintained
2019-10-16 audio/audiotag: Unfetchable, unmaintained
2019-10-16 audio/gmidimonitor: Unfetchable, unmaintained
2019-10-16 audio/gmpc-lyricwiki: Unfetchable, unmaintained
2019-10-16 audio/jack_mixer: Unfetchable, unmaintained
2019-10-16 audio/jmusic: Unfetchable, unmaintained
2019-10-16 audio/maplay: Unfetchable, unmaintained
2019-10-16 audio/mbox: Unfetchable, unmaintained
2019-10-16 audio/nuvolaplayer: Unfetchable, unmaintained
2019-10-16 audio/vagalume: Unfetchable, unmaintained
2019-10-16 audio/wmsmixer: Unfetchable, unmaintained
2019-10-16 audio/xmms2-scrobbler: Unfetchable, unmaintained
2019-10-16 benchmarks/filebench: Unfetchable, unmaintained
2019-10-16 biology/chemeq: Unfetchable, unmaintained
2019-10-16 biology/linux-foldingathome: Unfetchable, unmaintained
2019-10-16 cad/dxf2fig: Unfetchable, unmaintained
2019-10-16 cad/gerbv: Unfetchable, unmaintained
2019-10-16 cad/ghdl: Unfetchable, unmaintained
2019-10-16 comms/gsmlib: Unfetchable, unmaintained
2019-10-16 comms/nokryptia: Unfetchable, unmaintained
2019-10-16 databases/mrtg-mysql-load: Unfetchable, unmaintained
2019-10-16 databases/postgres-xl: Unfetchable, unmaintained
2019-10-16 databases/wmjsql: Unfetchable, unmaintained
2019-10-16 deskutils/dlume: Unfetchable, unmaintained
2019-10-16 deskutils/gkrellm-reminder2: Unfetchable, unmaintained
2019-10-16 deskutils/ljit: Unfetchable, unmaintained
2019-10-16 deskutils/mdh: Unfetchable, unmaintained
2019-10-16 devel/atlassian-plugin-sdk: Unfetchable, unmaintained
2019-10-15 devel/bingo: Abandoned upstream
2019-10-16 devel/dprog: Unfetchable, unmaintained
2019-10-16 devel/eblob: Unfetchable, unmaintained
2019-10-16 devel/elftoaout: Unfetchable, unmaintained
2019-10-16 devel/fga: Unfetchable, unmaintained
2019-10-16 devel/fib: Unfetchable, unmaintained
2019-10-16 devel/flickrnet: Unfetchable, unmaintained
2019-10-16 devel/fujaba: Unfetchable, unmaintained
2019-10-16 devel/funnelweb: Unfetchable, unmaintained
2019-10-16 devel/genproto: Unfetchable, unmaintained
2019-10-16 devel/gitphp: Unfetchable, unmaintained
2019-10-16 devel/gnatcoll: Unfetchable, unmaintained
2019-10-16 devel/kimwitu: Unfetchable, unmaintained
2019-10-16 devel/libghthash: Unfetchable, unmaintained
2019-10-16 devel/lua-alien: Unfetchable, unmaintained
2019-10-16 devel/monotone-viz: Unfetchable, unmaintained
2019-10-16 devel/noweb: Unfetchable, unmaintained
2019-10-16 devel/p65: Unfetchable, unmaintained
2019-10-16 devel/py-fileutils: Unfetchable, unmaintained
2019-10-16 devel/py-mercurialserver: Unfetchable, unmaintained
2019-10-16 devel/py-pqueue: Unfetchable, unmaintained
2019-10-16 devel/pypersrc: Unfetchable, unmaintained
2019-10-16 devel/root-doc: Unfetchable, unmaintained
2019-10-16 devel/sfio: Unfetchable, unmaintained
2019-10-16 devel/styx: Unfetchable, unmaintained
2019-10-16 devel/tclmore: Unfetchable, unmaintained
2019-10-16 devel/umem: Unfetchable, unmaintained
2019-10-16 dns/ez-ipupdate: Unfetchable, unmaintained
2019-10-16 editors/zoinks: Unfetchable, unmaintained
2019-10-16 emulators/aftp: Unfetchable, unmaintained
2019-10-16 emulators/ia64sim: Unfetchable, unmaintained
2019-10-16 emulators/loemu: Unfetchable, unmaintained
2019-10-16 emulators/pipelight: Unfetchable, unmaintained
2019-10-16 finance/ledgersmb: Unfetchable, unmaintained
2019-10-16 ftp/atftp: Unfetchable, unmaintained
2019-10-16 ftp/cftp: Unfetchable, unmaintained
2019-10-16 games/arkanoidsb: Unfetchable, unmaintained
2019-10-16 games/balazar: Unfetchable, unmaintained
2019-10-16 games/blockade: Unfetchable, unmaintained
2019-10-16 games/cleanq3: Unfetchable, unmaintained
2019-10-16 games/conquest: Unfetchable, unmaintained
2019-10-16 games/crafty-tablebase-no-pawn: Unfetchable, unmaintained
2019-10-16 games/epiar: Unfetchable, unmaintained
2019-10-16 games/exmars: Unfetchable, unmaintained
2019-10-16 games/fteqw: Unfetchable, unmaintained
2019-10-16 games/gnake: Unfetchable, unmaintained
2019-10-16 games/gru: Unfetchable, unmaintained
2019-10-16 games/gtkpool: Unfetchable, unmaintained
2019-10-16 games/imaze: Unfetchable, unmaintained
2019-10-16 games/inform: Unfetchable, unmaintained
2019-10-16 games/iourbanterror: Unfetchable, unmaintained
2019-10-16 games/iourbanterror-server: Unfetchable, unmaintained
2019-10-16 games/jools: Unfetchable, unmaintained
2019-10-16 games/legends: Unfetchable, unmaintained
2019-10-16 games/linux-enemyterritory-etpro: Unfetchable, unmaintained
2019-10-16 games/linux-worldofgoo-demo: Unfetchable, unmaintained
2019-10-16 games/noegnud-data: Unfetchable, unmaintained
2019-10-16 games/poker-engine: Unfetchable, unmaintained
2019-10-16 games/ptools: Unfetchable, unmaintained
2019-10-16 games/pyawale: Unfetchable, unmaintained
2019-10-16 games/pysycache-lang: Unfetchable, unmaintained
2019-10-16 games/qmars: Unfetchable, unmaintained
2019-10-16 games/quake-reaper: Unfetchable, unmaintained
2019-10-16 games/quake3-ra3: Unfetchable, unmaintained
2019-10-16 games/sdlCC: Unfetchable, unmaintained
2019-10-16 games/speyes: Unfetchable, unmaintained
2019-10-16 games/vodovod: Unfetchable, unmaintained
2019-10-16 games/wmeyes: Unfetchable, unmaintained
2019-10-16 games/wmshuffle: Unfetchable, unmaintained
2019-10-16 games/xabacus: Unfetchable, unmaintained
2019-10-16 games/xpacman: Unfetchable, unmaintained
2019-10-16 games/xscorch: Unfetchable, unmaintained
2019-10-16 graphics/aeskulap: Unfetchable, unmaintained
2019-10-16 graphics/agave: Unfetchable, unmaintained
2019-10-16 graphics/cbview: Unfetchable, unmaintained
2019-10-16 graphics/copperspice: Unfetchable, unmaintained
2019-10-16 graphics/cthumb: Unfetchable, unmaintained
2019-10-16 graphics/fujiplay: Unfetchable, unmaintained
2019-10-16 graphics/gimp-ez-perspective-plugin: Unfetchable, unmaintained
2019-10-16 graphics/gimp-focusblur-plugin: Unfetchable, unmaintained
2019-10-16 graphics/gimp-jagged-border-script: Unfetchable, unmaintained
2019-10-16 graphics/gimp-manual-html: Unfetchable, unmaintained
2019-10-16 graphics/gimp-save-for-web: Unfetchable, unmaintained
2019-10-16 graphics/gimp-wavelet-denoise-plugin: Unfetchable, unmaintained
2019-10-16 graphics/gimp-wavelet-sharpen-plugin: Unfetchable, unmaintained
2019-10-16 graphics/giram: Unfetchable, unmaintained
2019-10-16 graphics/inventor: Unfetchable, unmaintained, Depends on expiring graphics/libGLw
2019-10-16 graphics/jpg2pdf: Unfetchable, unmaintained
2019-10-16 graphics/jpgraph2: Unfetchable, unmaintained
2019-10-16 graphics/makehuman: Unfetchable, unmaintained
2019-10-16 graphics/pstoepsi: Unfetchable, unmaintained
2019-10-16 graphics/xmandel: Unfetchable, unmaintained
2019-10-16 irc/minbif: Unfetchable, unmaintained
2019-10-16 japanese/VTPSfont: Unfetchable, unmaintained
2019-10-16 japanese/asterisk-sounds: Unfetchable, unmaintained
2019-10-16 japanese/cannadic: Unfetchable, unmaintained
2019-10-16 japanese/edict-utf-8: Unfetchable, unmaintained
2019-10-16 japanese/kpcal: Unfetchable, unmaintained
2019-10-16 japanese/multiskkserv: Unfetchable, unmaintained
2019-10-16 japanese/skkfep: Unfetchable, unmaintained
2019-10-16 java/eclipse-log4e: Unfetchable, unmaintained
2019-10-16 java/eclipse-lomboz: Unfetchable, unmaintained
2019-10-16 java/java-checkstyle: Unfetchable, unmaintained
2019-10-16 korean/baekmukfonts-ttf: Unfetchable, unmaintained
2019-10-16 korean/gtkcomm: Unfetchable, unmaintained
2019-10-16 lang/arena: Unfetchable, unmaintained
2019-10-16 lang/diveintopython: Unfetchable, unmaintained
2019-10-16 lang/modula3: Unfetchable, unmaintained
2019-10-16 lang/p2c: Unfetchable, unmaintained
2019-10-16 lang/quack: Unfetchable, unmaintained
2019-10-16 lang/stldoc: Unfetchable, unmaintained
2019-10-16 mail/altermime: Unfetchable, unmaintained
2019-10-16 mail/autosig: Unfetchable, unmaintained
2019-10-16 mail/gkrellmmailwatch2: Unfetchable, unmaintained
2019-10-16 mail/mboxcheck-applet: Unfetchable, unmaintained
2019-10-16 mail/nmzmail: Unfetchable, unmaintained
2019-10-16 mail/poppy: Unfetchable, unmaintained
2019-10-16 mail/prom-wl: Unfetchable, unmaintained
2019-10-16 mail/py-apolicy: Unfetchable, unmaintained
2019-10-16 mail/spamdb-curses: Unfetchable, unmaintained
2019-10-16 mail/xlbiff: Unfetchable, unmaintained
2019-10-16 math/algotutor: Unfetchable, unmaintained
2019-10-16 math/nyh-hoc: Unfetchable, unmaintained
2019-10-16 math/superlu_mt: Unfetchable, unmaintained
2019-10-16 math/testu01: Unfetchable, unmaintained
2019-10-16 misc/astrolog: Unfetchable, unmaintained
2019-10-16 misc/chord2html: Unfetchable, unmaintained
2019-10-16 misc/crosspad: Unfetchable, unmaintained
2019-10-16 misc/detachtty: Unfetchable, unmaintained
2019-10-16 misc/dphys-config: Unfetchable, unmaintained
2019-10-16 misc/dvorakng: Unfetchable, unmaintained
2019-10-16 misc/gctpc: Unfetchable, unmaintained
2019-10-16 misc/gkrellm-helium: Unfetchable, unmaintained
2019-10-16 misc/gkrellweather2: Unfetchable, unmaintained
2019-10-16 misc/linm: Unfetchable, unmaintained
2019-10-16 misc/mc-light: Unfetchable, unmaintained
2019-10-16 misc/newer: Unfetchable, unmaintained
2019-10-16 misc/telbook: Unfetchable, unmaintained
2019-10-16 misc/valspeak: Unfetchable, unmaintained
2019-10-16 misc/xd: Unfetchable, unmaintained
2019-10-16 multimedia/audiopreview: Unfetchable, unmaintained
2019-10-16 multimedia/dvts: Unfetchable, unmaintained
2019-10-16 multimedia/gcfilms: Unfetchable, unmaintained
2019-10-16 multimedia/kissdx: Unfetchable, unmaintained
2019-10-16 multimedia/playd: Unfetchable, unmaintained
2019-10-16 multimedia/subtitleeditor: Unfetchable, unmaintained
2019-10-16 multimedia/umr: Unfetchable, unmaintained
2019-10-16 net/bluemix-cli: Unfetchable, unmaintained
2019-10-16 net/boclient: Unfetchable, unmaintained
2019-10-16 net/csync2: Unfetchable, unmaintained
2019-10-16 net/dictd-database: Unfetchable, unmaintained
2019-10-16 net/gtic: Unfetchable, unmaintained
2019-10-16 net/hidentd: Unfetchable, unmaintained
2019-10-16 net/ldap2dns: Unfetchable, unmaintained
2019-10-16 net/libmxp: Unfetchable, unmaintained
2019-10-16 net/librouteros: Unfetchable, unmaintained
2019-10-16 net/nettest: Unfetchable, unmaintained
2019-10-16 net/py-netstring: Unfetchable, unmaintained
2019-10-16 net/radiusd-cistron: Unfetchable, unmaintained
2019-10-16 net/rtptools: Unfetchable, unmaintained
2019-10-16 net/smbldap-tools: Unfetchable, unmaintained
2019-10-16 net/tcptrace: Unfetchable, unmaintained
2019-10-16 net/wackford-squeers: Unfetchable, unmaintained
2019-10-16 net/wmnet2: Unfetchable, unmaintained
2019-10-16 net-im/pidgin-birthday-reminder: Unfetchable, unmaintained
2019-10-16 net-im/pidgin-pidgimpd: Unfetchable, unmaintained
2019-10-16 net-im/poezio: Unfetchable, unmaintained
2019-10-16 net-mgmt/bsnmp-jails: Unfetchable, unmaintained
2019-10-16 net-mgmt/iog: Unfetchable, unmaintained
2019-10-16 net-mgmt/lanmap: Unfetchable, unmaintained
2019-10-16 net-mgmt/nagios-spamd-plugin: Unfetchable, unmaintained
2019-10-16 net-mgmt/nefu: Unfetchable, unmaintained
2019-10-16 net-mgmt/pixilate: Unfetchable, unmaintained
2019-10-16 net-mgmt/slate: Unfetchable, unmaintained
2019-10-16 net-mgmt/weplab: Unfetchable, unmaintained
2019-10-16 net-p2p/bnbt: Unfetchable, unmaintained
2019-10-16 net-p2p/btpd: Unfetchable, unmaintained
2019-10-16 net-p2p/gkremldk: Unfetchable, unmaintained
2019-10-16 news/newscache: Unfetchable, unmaintained
2019-10-16 news/nntpbtr: Unfetchable, unmaintained
2019-10-16 news/slrnconf: Unfetchable, unmaintained
2019-10-16 news/xpn: Unfetchable, unmaintained
2019-10-16 polish/ekg: Unfetchable, unmaintained
2019-10-16 polish/ekg2: Unfetchable, unmaintained
2019-10-16 ports-mgmt/fastest_sites: Unfetchable, unmaintained
2019-10-16 ports-mgmt/pkg-plist: Unfetchable, unmaintained
2019-10-16 ports-mgmt/symports: Unfetchable, unmaintained
2019-10-16 print/poster: Unfetchable, unmaintained
2019-10-16 russian/d1489: Unfetchable, unmaintained
2019-10-16 science/metaf2xml: Unfetchable, unmaintained
2019-10-16 security/authforce: Unfetchable, unmaintained
2019-10-16 security/avcheck: Unfetchable, unmaintained
2019-10-16 security/digest: Unfetchable, unmaintained
2019-10-16 security/fpm2: Unfetchable, unmaintained
2019-10-16 security/fwipe: Unfetchable, unmaintained
2019-10-16 security/gnome-password-generator: Unfetchable, unmaintained
2019-10-16 security/httprint: Unfetchable, unmaintained
2019-10-16 security/ike-scan: Unfetchable, unmaintained
2019-10-16 security/ipfwcount: Unfetchable, unmaintained
2019-10-16 security/libsparkcrypto: Unfetchable, unmaintained
2019-10-16 security/md4coll: Unfetchable, unmaintained
2019-10-16 security/md5coll: Unfetchable, unmaintained
2019-10-16 security/osiris: Unfetchable, unmaintained
2019-10-16 security/ranpwd: Unfetchable, unmaintained
2019-10-16 security/rdigest: Unfetchable, unmaintained
2019-10-16 security/smap: Unfetchable, unmaintained
2019-10-16 security/sshblock: Unfetchable, unmaintained
2019-10-16 shells/bashc: Unfetchable, unmaintained
2019-10-16 shells/flash: Unfetchable, unmaintained
2019-10-16 sysutils/cotty: Unfetchable, unmaintained
2019-10-16 sysutils/dt: Unfetchable, unmaintained
2019-10-16 sysutils/gkrellfire: Unfetchable, unmaintained
2019-10-16 sysutils/log_analysis: Unfetchable, unmaintained
2019-10-16 sysutils/mksunbootcd: Unfetchable, unmaintained
2019-10-16 sysutils/rfstool: Unfetchable, unmaintained
2019-10-16 sysutils/skill: Unfetchable, unmaintained
2019-10-16 sysutils/sloth: Unfetchable, unmaintained
2019-10-16 sysutils/snowlog: Unfetchable, unmaintained
2019-10-16 sysutils/wmfire: Unfetchable, unmaintained
2019-10-16 sysutils/xbattbar: Unfetchable, unmaintained
2019-10-16 textproc/bedic-data: Unfetchable, unmaintained
2019-10-16 textproc/clit: Unfetchable, unmaintained
2019-10-16 textproc/docbook-tdg: Unfetchable, unmaintained
2019-10-16 textproc/emacs-wiki: Depends on expiring ports
2019-10-16 textproc/htmlize.el: Unfetchable, unmaintained
2019-10-16 textproc/libflate: Unfetchable, unmaintained
2019-10-16 textproc/mguesser: Unfetchable, unmaintained
2019-10-16 textproc/opensched: Unfetchable, unmaintained
2019-10-16 textproc/opentoken: Unfetchable, unmaintained
2019-10-16 textproc/rot: Unfetchable, unmaintained
2019-10-16 textproc/rtfx: Unfetchable, unmaintained
2019-10-16 textproc/supercat: Unfetchable, unmaintained
2019-10-16 textproc/xml_ez_out: Unfetchable, unmaintained
2019-10-16 textproc/xmldiff: Unfetchable, unmaintained
2019-10-16 textproc/xqilla: Unfetchable, unmaintained
2019-10-16 www/WebMagick: Unfetchable, unmaintained
2019-10-16 www/bins: Unfetchable, unmaintained
2019-10-16 www/blogsum: Unfetchable, unmaintained
2019-10-16 www/boa: Unfetchable, unmaintained
2019-10-16 www/cgihtml: Unfetchable, unmaintained
2019-10-16 www/cgiparse: Unfetchable, unmaintained
2019-10-16 www/flot: Unfetchable, unmaintained
2019-10-16 www/ftasv: Unfetchable, unmaintained
2019-10-16 www/hastymail2-devel: Unfetchable, unmaintained
2019-10-16 www/htmlpp: Unfetchable, unmaintained
2019-10-16 www/http-analyze: Unfetchable, unmaintained
2019-10-16 www/junkbuster: Unfetchable, unmaintained
2019-10-16 www/links-hacked: Unfetchable, unmaintained
2019-10-16 www/llgal: Unfetchable, unmaintained
2019-10-16 www/mgstat: Unfetchable, unmaintained
2019-10-16 www/php-screw: Unfetchable, unmaintained
2019-10-16 www/phproxy: Unfetchable, unmaintained
2019-10-16 www/py-prewikka: Unfetchable, unmaintained
2019-10-16 www/redmine-backlogs: Unfetchable, unmaintained
2019-10-16 www/swfdec-plugin: Unfetchable, unmaintained
2019-10-16 www/swish-e: Unfetchable, unmaintained
2019-10-16 x11/blast: Unfetchable, unmaintained
2019-10-16 x11/dynamag: Unfetchable, unmaintained
2019-10-16 x11/xcurs: Unfetchable, unmaintained
2019-10-16 x11/xscreensaver-gnome: Unfetchable, unmaintained
2019-10-16 x11/xscreensaver-gnome-hacks: Unfetchable, unmaintained
2019-10-16 x11-clocks/cairo-clock: Unfetchable, unmaintained
2019-10-16 x11-clocks/pclock: Unfetchable, unmaintained
2019-10-16 x11-clocks/stopwatch: Unfetchable, unmaintained
2019-10-16 x11-clocks/wmfuzzy: Unfetchable, unmaintained
2019-10-16 x11-fm/emelfm2: Unfetchable, unmaintained
2019-10-16 x11-fm/ezfm: Unfetchable, unmaintained
2019-10-16 x11-fm/ultracopier: Unfetchable, unmaintained
2019-10-16 x11-fm/xplore: Unfetchable, unmaintained
2019-10-16 x11-fonts/indic-ttf: Unfetchable, unmaintained
2019-10-16 x11-fonts/pingwi: Unfetchable, unmaintained
2019-10-16 x11-themes/cursor-ecliz: Unfetchable, unmaintained
2019-10-16 x11-themes/cursor-grounation-theme: Unfetchable, unmaintained
2019-10-16 x11-themes/cursor-neutral-theme: Unfetchable, unmaintained
2019-10-16 x11-themes/cursor-polar-theme: Unfetchable, unmaintained
2019-10-16 x11-themes/gtk-envy-theme: Unfetchable, unmaintained
2019-10-16 x11-themes/gtk-equinox-engine: Unfetchable, unmaintained
2019-10-16 x11-themes/gtk-qnxtheme: Unfetchable, unmaintained
2019-10-16 x11-themes/plank-theme-moka: Unfetchable, unmaintained
2019-10-15 x11-toolkits/swt-devel: Obsolete. Superseded by x11-toolkits/swt
2019-10-16 x11-wm/genmenu: Unfetchable, unmaintained
2019-10-16 x11-wm/musca: Unfetchable, unmaintained
2019-10-16 x11-wm/weewm: Unfetchable, unmaintained
2019-10-16 x11-wm/windowlab: Unfetchable, unmaintained
2019-10-16 x11-wm/wmfs: Unfetchable, unmaintained
Notes:
svn path=/head/; revision=514601
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TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq
reads to mammalian-sized genomes using the ultra high-throughput short read
aligner Bowtie, and then analyzes the mapping results to identify splice
junctions between exons.
Note:
TopHat has been Superseded by HISAT2 and is no longer maintained upstream.
This port is provided mainly for revisiting old studies where TopHat was used.
Notes:
svn path=/head/; revision=512997
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MultiQC searches a given directory for analysis logs and compiles an HTML
report. It's a general use tool, perfect for summarising the output from
numerous bioinformatics tools.
Notes:
svn path=/head/; revision=512646
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Haplohseq identifies regions of allelic imbalance (AI) in sequencing data
obtained from impure samples where AI events exist in a potentially low
proportion of cells in the sample. Input to the software includes a VCF file
of genotypes and estimated phased genotypes.
Notes:
svn path=/head/; revision=512137
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genomic data)
Notes:
svn path=/head/; revision=506417
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Notes:
svn path=/head/; revision=505017
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Notes:
svn path=/head/; revision=504268
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analysis
The BOLT-LMM software package currently consists of two main algorithms, the
BOLT-LMM algorithm for mixed model association testing, and the BOLT-REML
algorithm for variance components analysis (i.e., partitioning of
SNP-heritability and estimation of genetic correlations).
Notes:
svn path=/head/; revision=502673
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their abundance, etc
Notes:
svn path=/head/; revision=502661
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