aboutsummaryrefslogtreecommitdiff
path: root/biology/Makefile
Commit message (Expand)AuthorAgeFilesLines
* Remove expired ports:Rene Ladan2021-04-071-3/+0
* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-2/+0
* biology/vcf2hap: Generate .hap file from VCF for haplohseqJason W. Bacon2021-03-231-0/+1
* biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF fileJason W. Bacon2021-03-231-0/+1
* biology/vcf-split: Split a multi-sample VCF into single-sample VCFsJason W. Bacon2021-03-211-0/+1
* biology/biolibc: Low-level high-performance bioinformatics libraryJason W. Bacon2021-03-211-0/+1
* biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF formatJason W. Bacon2021-03-151-0/+1
* Move: biology/py-fastTSNE -> math/py-openTSNEYuri Victorovich2021-03-131-1/+0
* New port: biology/rampler: Standalone module for sampling genomic sequencesYuri Victorovich2021-01-191-0/+1
* New port: biology/edlib: Fast C++ library for sequence alignment using edit d...Yuri Victorovich2021-01-191-0/+1
* New port: biology/spoa: C++ implementation of the partial order alignment (PO...Yuri Victorovich2021-01-191-0/+1
* New port: biology/biosoup: Collection of C++ header-only data structures for ...Yuri Victorovich2021-01-191-0/+1
* New port: biology/bioparser: C++ header only parsing library for several form...Yuri Victorovich2021-01-191-0/+1
* Hook haplohseq to the buildAntoine Brodin2021-01-141-0/+1
* biology/pooler: Optimise DNA sequencing primer-set combinationsJason W. Bacon2020-11-151-0/+1
* biology/py-biom-format: Restore in preparation for an update to v2.1.8Joseph Mingrone2020-09-241-0/+1
* Remove expired ports:Rene Ladan2020-09-191-2/+0
* Remove expired ports:Rene Ladan2020-08-271-1/+0
* Remove deprecated ports:Rene Ladan2020-08-151-1/+0
* Add rubygem-bio-shell 1.0.0Sunpoet Po-Chuan Hsieh2020-07-241-0/+1
* Add rubygem-bio-old-biofetch-emulator 1.0.0Sunpoet Po-Chuan Hsieh2020-07-241-0/+1
* Add rubygem-bio-executables 1.0.0Sunpoet Po-Chuan Hsieh2020-07-241-0/+1
* biology/picard-tools: CLI tools for manipulating sequencing dataJason W. Bacon2020-06-131-0/+1
* biology/bioawk: BWK awk modified for biological dataJason W. Bacon2020-06-051-0/+1
* biology/subread: Read alignment, quantification and mutation discoveryJason W. Bacon2020-06-051-0/+1
* bioloty/vt: Discovers short variants from Next Generation Sequencing dataJason W. Bacon2020-06-041-0/+1
* New port: biology/py-hits: Utilities for processing high-throughput sequencin...Yuri Victorovich2020-05-161-0/+1
* New port: biology/py-scikit-bio: Data structures, algorithms, educational res...Yuri Victorovich2020-05-161-0/+1
* New port: biology/py-pandas-charm: Library for getting character matrices int...Yuri Victorovich2020-05-161-0/+1
* New port: biology/py-ete3: Framework for the analysis and visualization of treesYuri Victorovich2020-05-161-0/+1
* New port: biology/scrm: Coalescent simulator for biological sequencesYuri Victorovich2020-05-151-0/+1
* - Resurrect and unbreak by updating to version 34.0Alexey Dokuchaev2020-05-101-0/+1
* Remove expired ports:Rene Ladan2020-05-051-5/+0
* biology/plink: Whole genome association analysis toolsetJason W. Bacon2020-05-041-0/+1
* biology/gcta: Genome-wide Complex Trait AnalysisJason W. Bacon2020-04-151-0/+1
* Resurrect biology/linux-foldingathomeMateusz Piotrowski2020-03-211-0/+1
* Remove expired ports:Rene Ladan2020-01-271-2/+0
* Add p5-Bio-Variation 1.7.4Sunpoet Po-Chuan Hsieh2019-12-081-0/+1
* Add p5-Bio-DB-NCBIHelper 1.7.6Sunpoet Po-Chuan Hsieh2019-12-081-0/+1
* Add p5-Bio-DB-EMBL 1.7.4Sunpoet Po-Chuan Hsieh2019-12-081-0/+1
* Remove expired ports:Rene Ladan2019-10-161-2/+0
* biology/tophat: Fast splice junction mapper for RNA-Seq readsJason W. Bacon2019-09-271-0/+1
* biology/py-multiqc: Aggregate bioinformatics analysis reportsJason W. Bacon2019-09-231-0/+1
* biology/haplohseq: Identify regions of allelic imbalanceJason W. Bacon2019-09-161-0/+1
* New port: biology/libbigwig: C library for handling bigWig files (containing ...Yuri Victorovich2019-07-111-0/+1
* New port: biology/viennarna: Alignment tools for the structural analysis of RNAYuri Victorovich2019-06-241-0/+1
* New port: biology/treekin: Efficient computation of RNA folding dynamicsYuri Victorovich2019-06-151-0/+1
* biology/bolt-lmm: Mixed model association testing and variance component anal...Jason W. Bacon2019-05-261-0/+1
* New port: biology/cufflinks: Cufflinks assembles transcripts, estimates their...Yuri Victorovich2019-05-251-0/+1
generated by cgit v1.2.3 (git 2.25.1) at 2024-05-14 01:27:02 +0000