aboutsummaryrefslogtreecommitdiff
path: root/biology/Makefile
Commit message (Expand)AuthorAgeFilesLines
* biology/py-orange3-bioinformatics: Remove expired portRene Ladan2025-06-231-1/+0
* biology/py-orange3-single-cell: Remove expired portRene Ladan2025-06-231-1/+0
* */Makefile: Sort SUBDIRsPo-Chuan Hsieh2025-06-131-1/+1
* biology/py-pydeseq2: Python reimplementation of the DESeq2 R packageJason W. Bacon2025-06-111-0/+1
* biology/checkm: Remove expired portRene Ladan2025-06-021-1/+0
* biology/fasda-utils: Fast and simple differential analysis extrasJason W. Bacon2025-04-061-0/+1
* biology/ncbi-vdb: Remove expired portRene Ladan2025-01-011-1/+0
* biology/preseq: Predict yield of distinct reads from a genomic libraryJason W. Bacon2024-11-221-0/+1
* biology/mca-calling: Core tools for mCA event callingJason W. Bacon2024-10-241-0/+1
* biology/coverm: New port: Read coverage calculator for metagenomicsYuri Victorovich2024-10-051-0/+1
* biology/fastani: New port: Fast Whole-Genome Similarity (ANI) EstimationYuri Victorovich2024-09-211-0/+1
* biology/andi: New ports: Efficient estimation of evolutionary distancesYuri Victorovich2024-09-071-0/+1
* biology/gkl: New port: Accelerated kernel library for genomicsYuri Victorovich2024-08-041-0/+1
* biology/fermi-lite: New port: Library anf tool for assembling Illumina short ...Yuri Victorovich2024-08-031-0/+1
* biology/pbseqan: Remove expired portRene Ladan2024-05-051-1/+0
* biology/py-newick: Add new portWen Heping2024-02-031-0/+1
* biology/recombine: Remove expired portRene Ladan2024-01-181-1/+0
* biology/seqio: Remove expired portMuhammad Moinur Rahman2024-01-181-1/+0
* biology/sim4: Remove expired portMuhammad Moinur Rahman2024-01-181-1/+0
* biology/py-macs3: Peak caller for TF binding sitesJason W. Bacon2024-01-101-0/+1
* biology/R-cran-Biobase: New portMuhammad Moinur Rahman2023-12-151-0/+1
* biology/R-cran-BiocGenerics: New portMuhammad Moinur Rahman2023-12-151-0/+1
* biology/R-cran-BiocManager: New portMuhammad Moinur Rahman2023-12-151-0/+1
* biology/py-htseq: Python library for sequence analysisJason W. Bacon2023-07-281-0/+1
* biology/salmon: Transcript-level quantification of RNA-seqJason W. Bacon2023-07-211-0/+1
* biology/btllib: New port: Bioinformatics Technology Lab common code libraryYuri Victorovich2023-07-211-0/+1
* biology/seqwish: New port: Assembly By Short Sequences: parallel, paired-end ...Yuri Victorovich2023-07-211-0/+1
* biology/locarna: New port: LocARNA provides several tools for the structural ...Yuri Victorovich2023-07-161-0/+1
* biology/mashmap: New port: Fast approximate aligner for long DNA sequencesYuri Victorovich2023-07-111-0/+1
* biology/bifrost: Parallel tool for de Bruijn graphsJason W. Bacon2023-07-071-0/+1
* biology/chip-seq: Metaport for ChIP-Seq analysisJason W. Bacon2023-06-141-0/+1
* biology/bcf-score: Bcftools plugins for GWAS-VCF summary statisticsJason W. Bacon2023-02-251-0/+1
* biology/wfa2-lib: Exact gap-affine algorithm using homologyJason W. Bacon2023-01-301-0/+1
* biology/atac-seq: Metaport for ATAC-Seq analysisJason W. Bacon2023-01-111-0/+1
* biology/py-biosig: New port: Library for reading and writing different biosig...Yuri Victorovich2022-12-301-0/+1
* biology/rna-seq: Metaport for RNA-Seq analysisJason W. Bacon2022-12-121-0/+1
* biology/fasda: Fast and simple differential analysisJason W. Bacon2022-12-121-0/+1
* biology/py-pyrodigal: New port: Python binding for Prodigal, an ORF finder fo...Yuri Victorovich2022-12-061-0/+1
* biology/metaeuk: New port: Gene discovery and annotation for large-scale euka...Yuri Victorovich2022-11-261-0/+1
* biology/augustus: New port: Genome annotation toolYuri Victorovich2022-11-251-0/+1
* biology/barrnap: New port: BAsic Rapid Ribosomal RNA PredictorYuri Victorovich2022-11-251-0/+1
* biology/megahit: Ultra-fast single-node metagenomics assemblyJason W. Bacon2022-11-221-0/+1
* biology/libcombine: New port: C++ library for working with the COMBINE archiv...Yuri Victorovich2022-10-211-0/+1
* biology/py-valerius: New port: Python bioinformatics toolsYuri Victorovich2022-10-041-0/+1
* biology/kmcp: New port: Accurate metagenomic profiling & fast large-scale ge...Yuri Victorovich2022-08-071-0/+1
* biology/ngs-sdk: Revert: Un-remove, ngs was moved into sra-toolsYuri Victorovich2022-07-071-0/+1
* biology/ngs-sdk: Remove, ngs was moved into sra-toolsYuri Victorovich2022-07-061-1/+0
* biology/mopac: Move to science/mopac; Add TIMESTAMP to distinfo; Take maintai...Yuri Victorovich2022-06-191-1/+0
* biology/py-mrcfile: New port: MRC file I/O library which is used in structura...Yuri Victorovich2022-05-011-0/+1
* biology/fastq-trim: Lightening fast sequence read trimmerJason W. Bacon2022-03-191-0/+1
generated by cgit v1.2.3 (git 2.25.1) at 2025-10-31 08:39:38 +0000