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* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
| | | | Reported by: lwhsu
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* - Upgrade math/eigen3 to 3.3.8;Thierry Thomas2020-12-121-1/+1
| | | | | | | | | | | | | - Add some dependencies which might be detected by Find_Package but not registered; - Bump PORTREVISION of consumers. PR: 250833 Submitted by: /me Approved by: tcberner@ (KDE / maintainer) + exp-run Notes: svn path=/head/; revision=557839
* biology/cufflinks: fix build on recent currentTobias C. Berner2020-08-281-0/+11
| | | | Notes: svn path=/head/; revision=546790
* biology/htslib: Upgrade to 1.10.2Jason W. Bacon2020-08-031-0/+1
| | | | | | | | | | | | Numerous bug fixes and enhancements since 1.9: https://github.com/samtools/htslib/tags Bump PORTREVISION on dependents that don't require additional patching PR: 248089 Notes: svn path=/head/; revision=544090
* biology/cufflinks: fix build on GCC architecturesPiotr Kubaj2020-07-081-1/+1
| | | | | | | | | Using Boost requires modern compiler. MFH: 2020Q3 (fix build blanket) Notes: svn path=/head/; revision=541482
* biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89Yuri Victorovich2020-03-313-17/+10
| | | | | | | Add the pull request that fixes the boost::thread build failures. Notes: svn path=/head/; revision=529953
* devel/boost-*: update to 1.72.0Jan Beich2019-12-111-1/+1
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_72_0.html PR: 241449 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D22136 Notes: svn path=/head/; revision=519824
* devel/boost-*: update to 1.71.0Jan Beich2019-08-191-0/+1
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_71_0.html PR: 238827 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D20774 Notes: svn path=/head/; revision=509290
* biology/cufflinks: Fix build on i386 by removing the hard-coded -m64Yuri Victorovich2019-05-291-0/+16
| | | | | | | Reported by: fallout Notes: svn path=/head/; revision=502929
* New port: biology/cufflinks: Cufflinks assembles transcripts, estimates ↵Yuri Victorovich2019-05-255-0/+79
their abundance, etc Notes: svn path=/head/; revision=502661
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