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* biology/iqtree: switch to outsource cmake buildJoseph Mingrone2018-12-271-2/+2
* Update math/eigen3 to 3.3.7Tobias C. Berner2018-12-261-0/+1
* Change cmake default behaviour to outsource.Tobias C. Berner2018-12-258-8/+8
* biology/iqtree: Update to version 1.6.9Joseph Mingrone2018-12-232-5/+4
* - Update to 1.73Wen Heping2018-12-222-5/+4
* Remove expired ports:Rene Ladan2018-12-214-57/+0
* biology/gff2ps: update 0.98d to 0.98lVinícius Zavam2018-12-192-5/+5
* biology/diamond: Update to 0.9.23 plus fixes after releaseJoseph Mingrone2018-12-173-10/+11
* Update Qt5 to 5.12.0Tobias C. Berner2018-12-161-0/+11
* New port: biology/py-fastTSNE: Fast, parallel implementations of t-SNEYuri Victorovich2018-12-155-0/+47
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-12-1237-20/+37
* devel/boost-*: update to 1.69.0Jan Beich2018-12-125-3/+5
* Remove biology/njplotJoseph Mingrone2018-12-115-111/+0
* biology/mummer: Add USES=compiler:c++11-langYuri Victorovich2018-12-111-1/+1
* biology/mummer: Update 3.23 -> 4.0.0beta2-2Yuri Victorovich2018-12-113-47/+61
* biology/mummer: Take maintainershipYuri Victorovich2018-12-111-1/+1
* New port: math/checkm: Quality assessment tool for the microbial genomesYuri Victorovich2018-12-074-0/+43
* New port: math/groopm: Metagenomic binning suiteYuri Victorovich2018-12-074-0/+35
* devel/gradle: Update to 5.0Yuri Victorovich2018-12-042-4/+4
* biology/gatk: Change gradle4->gradle because it builds fine with both gradle ...Yuri Victorovich2018-12-031-2/+2
* biology/gatk: Correct the targetYuri Victorovich2018-12-031-1/+1
* New port: biology/gatk: Variant discovery in high-throughput sequencing dataYuri Victorovich2018-12-036-0/+118
* Mark QT4 ports/functionality for removal on 2019-03-15Rene Ladan2018-12-021-0/+3
* biology/igv: Update 2.4.15 -> 2.4.16Yuri Victorovich2018-11-182-6/+6
* biology/molden: update to 5.8.2Johannes M Dieterich2018-11-133-10/+45
* biology/seqan-apps: fix build with GCC-based architecturesSteve Wills2018-11-091-2/+4
* biology/molden: Unbreak: fix the problem that it can't find libgcc_s.so from gccYuri Victorovich2018-11-071-1/+2
* Fix build failure with base GCC because of double typedefs.Mark Linimon2018-11-051-0/+48
* Remove the incorrect typedefs to fix build on tier-2.Mark Linimon2018-11-052-0/+29
* Remove the inccorrect typedefs to fix build on tier-2.Mark Linimon2018-11-051-4/+0
* biology/igv: Update 2.4.10 -> 2.4.15Yuri Victorovich2018-11-043-24/+21
* biology/canu: Upgrade to 1.8, add experimental SLURM integrationJason W. Bacon2018-11-045-31/+102
* biology/bowtie: Patch for gcc8 and clean upJason W. Bacon2018-11-032-6/+17
* biology/bowtie: Revert previous commit with missing log messageJason W. Bacon2018-11-032-17/+5
* biology/bowtie: PatchJason W. Bacon2018-11-032-5/+17
* biology/py-loompy: Update 2.0.15 -> 2.0.16Yuri Victorovich2018-10-302-4/+4
* biology/iqtree: Update to version 1.6.8Joseph Mingrone2018-10-282-4/+4
* Fix build with tier-2 arches.Mark Linimon2018-10-281-1/+7
* biology/py-pyfaidx: Update 0.5.5.1 -> 0.5.5.2Yuri Victorovich2018-10-282-4/+4
* biology/p5-transdecoder: Upgrade to 5.4.0Jason W. Bacon2018-10-234-30/+44
* biology/hyphy: Update to version 2.3.14.16Joseph Mingrone2018-10-203-5/+11
* biology/py-loompy: Update 2.0.14 -> 2.0.15Yuri Victorovich2018-10-192-4/+4
* New port: biology/py-gffutils: Work with GFF and GTF files in a flexible data...Yuri Victorovich2018-10-194-0/+36
* New port: biology/py-pyfaidx: Efficient pythonic random access to fasta subse...Yuri Victorovich2018-10-194-0/+38
* New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) f...Yuri Victorovich2018-10-194-0/+32
* biology/ngs-sdk: Update 2.9.2 -> 2.9.3Yuri Victorovich2018-10-183-5/+5
* biology/py-orange3-single-cell: Update 0.8.1 -> 0.8.2Yuri Victorovich2018-10-172-4/+4
* biology/iqtree: Update to version 1.6.7.1Joseph Mingrone2018-10-162-4/+4
* biology/py-orange3-single-cell: Update 0.8.0 -> 0.8.1Yuri Victorovich2018-10-142-6/+11
* biology/py-orange3-bioinformatics: Update 3.2.0 -> 3.2.2Yuri Victorovich2018-10-142-4/+4
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