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* math/py-fastcluster: Remove PYNUMPYPo-Chuan Hsieh2021-04-181-2/+2
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* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* Update to 1.1.28Sunpoet Po-Chuan Hsieh2021-02-062-4/+4
| | | | | | | | Changes: https://github.com/dmuellner/fastcluster/releases https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt Notes: svn path=/head/; revision=564286
* Update to 1.1.27Sunpoet Po-Chuan Hsieh2021-01-263-5/+4
| | | | | | | | Changes: https://github.com/dmuellner/fastcluster/releases https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt Notes: svn path=/head/; revision=562817
* Relax hardcoded paths to fix build with Python 3.8.7Kai Knoblich2020-12-241-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | Since r558913 Python 3.8 incorporates BPO-42604 [1] which changed the shared libs naming scheme. This means "EXT_SUFFIX" is now derived from SOABI and yields with Python 3.8 to ".cpython-38.so" instead of ".so". The affected ports strip the libaries in the "post-install" target via hardcoded path(s) and the build fails at the end because the new extension is not expected at this place. Remedy the issue by adding wildcards to these paths. This should also prepare the ports for future Python releases, which will use the new shared libs naming scheme. [1] https://bugs.python.org/issue42604 PR: 252057 Reported by: John Kennedy Reviewed by: fluffy, koobs Approved by: koobs (python) Notes: svn path=/head/; revision=559094
* scipy 1.5.4 is only compatible with python 3.6+Antoine Brodin2020-12-241-1/+1
| | | | | | | Reported by: pkg-fallout Notes: svn path=/head/; revision=559053
* Update to 1.1.26Sunpoet Po-Chuan Hsieh2020-01-012-5/+4
| | | | | | | | Changes: https://github.com/dmuellner/fastcluster/releases https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt Notes: svn path=/head/; revision=521731
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2019-07-261-1/+1
| | | | | | | | | | | | | | | | | | as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330 Notes: svn path=/head/; revision=507372
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-12-121-0/+1
| | | | | | | | | | | | | | | | | | defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, as a double check, everything INDEX-11 showed depending on lang/gcc7. PR: 231590 Notes: svn path=/head/; revision=487272
* Use PY_FLAVOR for dependencies.Mathieu Arnold2018-06-201-1/+1
| | | | | | | | | | FLAVOR is the current port's flavor, it should not be used outside of this scope. Sponsored by: Absolight Notes: svn path=/head/; revision=472884
* Update to 1.1.25Sunpoet Po-Chuan Hsieh2018-06-012-5/+4
| | | | | | | Changes: https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt Notes: svn path=/head/; revision=471306
* Switch all pypi.python.org WWWs to a new PyPi home pypi.org whereDmitry Marakasov2018-04-251-1/+1
| | | | | | | | | | they now redirect to anyway. All new urls checked to return 200, I've fixed a couple of them in the process. Approved by: portmgr blanket, mat Notes: svn path=/head/; revision=468282
* Bump PORTREVISIONs of all users of math/mpc that we just updated toGerald Pfeifer2018-03-101-0/+1
| | | | | | | version 1.1.0 (via revision 464079). Notes: svn path=/head/; revision=464084
* Update to 1.1.24Sunpoet Po-Chuan Hsieh2018-02-253-21/+26
| | | | | | | | | | | | | | | | - Update COMMENT - Add LICENSE_FILE - Add missing OPTIONS_DEFINE=DOCS - Strip shared library - Convert to options target helper - Add PyPI and GitHub repository to WWW - Take maintainership Changes: https://github.com/dmuellner/fastcluster https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt Notes: svn path=/head/; revision=462923
* Give xmj@'s ports back to the poolTobias C. Berner2018-02-241-1/+1
| | | | | | | | PR: 226157 Submitted by: xmj Notes: svn path=/head/; revision=462775
* Convert Python ports to FLAVORS.Mathieu Arnold2017-11-301-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Ports using USE_PYTHON=distutils are now flavored. They will automatically get flavors (py27, py34, py35, py36) depending on what versions they support. There is also a USE_PYTHON=flavors for ports that do not use distutils but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if using distutils but flavors are not wanted. A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been added to cope with Python ports that did not have the Python PKGNAMEPREFIX but are flavored. USES=python now also exports a PY_FLAVOR variable that contains the current python flavor. It can be used in dependency lines when the port itself is not python flavored. For example, deskutils/calibre. By default, all the flavors are generated. To only generate flavors for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf. In all the ports with Python dependencies, the *_DEPENDS entries MUST end with the flavor so that the framework knows which to build/use. This is done by appending '@${PY_FLAVOR}' after the origin (or @${FLAVOR} if in a Python module with Python flavors, as the content will be the same). For example: RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} PR: 223071 Reviewed by: portmgr, python Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D12464 Notes: svn path=/head/; revision=455210
* Update to 1.1.23Tobias C. Berner2017-06-032-4/+4
| | | | | | | | | PR: 219354 Submitted by: xmj Approved by: xmj (maintainer) Notes: svn path=/head/; revision=442493
* - Update to 1.1.21Dmitry Marakasov2017-02-012-5/+6
| | | | | | | | | | | - Allow concurrent installs (fix docdir) PR: 212213 Submitted by: xmj@FreeBSD.org Approved by: maintainer timeout (johannes@perceivon.net, 6 weeks) Notes: svn path=/head/; revision=433001
* Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the ↵Torsten Zuehlsdorff2016-06-231-1/+1
| | | | | | | | | | | owner requested. This only affects "Created by" lines with one exception: devel/uclcmd. There the maintainer is changed. This was overlooked in r416918. Approved by: junovitch (mentor) Notes: svn path=/head/; revision=417356
* Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.netTorsten Zuehlsdorff2016-06-151-1/+1
| | | | | | | | | PR: 210265 Submitted by: Johannes Jost Meixner (johannes@perceivon.net) Approved by: pi (mentor) Notes: svn path=/head/; revision=416918
* Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.orgKurt Jaeger2016-05-251-1/+1
| | | | | | | | PR: 209746 Submitted by: xmj Notes: svn path=/head/; revision=415848
* - Update to 1.1.20Dmitry Marakasov2016-05-242-4/+3
| | | | | | | | PR: 209623 Submitted by: xmj (maintainer) Notes: svn path=/head/; revision=415751
* Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.Mathieu Arnold2016-04-011-1/+1
| | | | | | | | With hat: portmgr Sponsored by: Absolight Notes: svn path=/head/; revision=412348
* - Convert ports of math/ to new USES=pythonMarcus von Appen2014-10-211-3/+2
| | | | | | | Approved by: portmgr (implicit) Notes: svn path=/head/; revision=371328
* Update the default version of GCC in the Ports Collection from GCC 4.7.4Gerald Pfeifer2014-09-101-1/+1
| | | | | | | | | | | | | to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit) Notes: svn path=/head/; revision=367888
* Update the default version of GCC used in the Ports Collection fromGerald Pfeifer2014-03-101-0/+1
| | | | | | | | | | | | | | GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk. Part II, Bump PORTREVISIONs. PR: 182136 Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports) Tested by: bdrewery (two -exp runs) Notes: svn path=/head/; revision=347809
* math/py-fastcluster: Python functions for hierarchical clusteringWilliam Grzybowski2013-12-183-0/+48
Fastcluster provides Python functions for hierarchical clustering. It generates hierarchical clusters from distance matrices or from vector data. Part of this module is intended to replace the functions linkage, single, complete, average, weighted, centroid, median, ward in the module scipy.cluster.hierarchy with the same functionality but much faster algorithms. Moreover, the function 'linkage_vector' provides memory-efficient clustering for vector data. The interface is very similar to MATLAB's Statistics Toolbox API to make code easier to port from MATLAB to Python/Numpy. The core implementation of this library is in C++ for efficiency. WWW: http://danifold.net/fastcluster.html PR: ports/184931 Submitted by: Johannes Jost Meixner <xmj chaot.net> Notes: svn path=/head/; revision=336815
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