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# Created by: camson@bilateral.com.au
PORTNAME= artemis
DISTVERSIONPREFIX= v
DISTVERSION= 17.0.1-11
DISTVERSIONSUFFIX= -g3e43d27e
CATEGORIES= biology java
MAINTAINER= yuri@FreeBSD.org
COMMENT= DNA sequence viewer and annotation tool
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
RUN_DEPENDS= bash:shells/bash
USES= gmake shebangfix
USE_GITHUB= yes
GH_ACCOUNT= sanger-pathogens
SHEBANG_FILES= act art bamview dnaplotter test/*.sh etc/go_associations.pl
USE_JAVA= yes
ALL_TARGET= jar
NO_ARCH= yes
PLIST_SUB= PORTVERSION="${PORTVERSION}"
post-extract:
@cd ${WRKDIR} && ${MV} Artemis-${DISTVERSION}${DISTVERSIONSUFFIX} ${PORTNAME}-${DISTVERSION}${DISTVERSIONSUFFIX}
do-install:
@${MKDIR} ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION}
.for f in jar_build lib etc images artemis_sqlmap
@cd ${WRKSRC} && ${COPYTREE_SHARE} ${f} ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION}
.endfor
@cd ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION} && ${MV} jar_build jars
.for f in art act bamview dnaplotter
${INSTALL_SCRIPT} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION}/${f}
@${REINPLACE_CMD} -i '' -e 's|APPLICATION_HOME=.*|&/jars|' ${STAGEDIR}${PREFIX}/${PORTNAME}-${PORTVERSION}/${f}
@(${ECHO} "#!/bin/sh"; ${ECHO} ""; ${ECHO} "cd ${PREFIX}/${PORTNAME}-${PORTVERSION} && ./${f}") > ${STAGEDIR}${PREFIX}/bin/${f}
@${CHMOD} +x ${STAGEDIR}${PREFIX}/bin/${f}
.endfor
.include <bsd.port.mk>
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