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bin/a3m_database_extract
bin/a3m_database_filter
bin/a3m_database_reduce
bin/a3m_extract
bin/a3m_reduce
bin/cstranslate
bin/cstranslate_mpi
bin/ffindex_apply
bin/ffindex_apply_mpi
bin/ffindex_build
bin/ffindex_from_fasta
bin/ffindex_from_fasta_with_split
bin/ffindex_get
bin/ffindex_modify
bin/ffindex_order
bin/ffindex_reduce
bin/ffindex_unpack
bin/hhalign
bin/hhalign_mpi
bin/hhalign_omp
bin/hhblits
bin/hhblits_ca3m
bin/hhblits_mpi
bin/hhblits_omp
bin/hhconsensus
bin/hhfilter
bin/hhmake
bin/hhsearch
bin/hhsearch_mpi
bin/hhsearch_omp
%%DATADIR%%/data/context_data.crf
%%DATADIR%%/data/context_data.lib
%%DATADIR%%/data/cs219.lib
%%DATADIR%%/data/do_not_delete
%%DATADIR%%/data/do_not_delete.phr
%%DATADIR%%/data/do_not_delete.pin
%%DATADIR%%/data/do_not_delete.psq
%%DATADIR%%/scripts/Align.pm
%%DATADIR%%/scripts/HHPaths.pm
%%DATADIR%%/scripts/a3m.py
%%DATADIR%%/scripts/addss.pl
%%DATADIR%%/scripts/check_a3m.py
%%DATADIR%%/scripts/cif2fasta.py
%%DATADIR%%/scripts/create_profile_from_hhm.pl
%%DATADIR%%/scripts/create_profile_from_hmmer.pl
%%DATADIR%%/scripts/ffindex.py
%%DATADIR%%/scripts/get_a3m_size.py
%%DATADIR%%/scripts/hh_reader.py
%%DATADIR%%/scripts/hhmakemodel.pl
%%DATADIR%%/scripts/hhmakemodel.py
%%DATADIR%%/scripts/hhsuitedb.py
%%DATADIR%%/scripts/mergeali.pl
%%DATADIR%%/scripts/multithread.pl
%%DATADIR%%/scripts/pdb2fasta.pl
%%DATADIR%%/scripts/pdbfilter.pl
%%DATADIR%%/scripts/pdbfilter.py
%%DATADIR%%/scripts/reformat.pl
%%DATADIR%%/scripts/renumberpdb.pl
%%DATADIR%%/scripts/splitfasta.pl
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