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# Created by: barnhart@genetics.wustl.edu
# $FreeBSD$
PORTNAME= hmmer
PORTVERSION= 3.3
CATEGORIES= biology
MASTER_SITES= http://eddylab.org/software/hmmer/
MAINTAINER= mzaki@e-mail.ne.jp
COMMENT= Profile hidden Markov models for biological sequence analysis
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
ONLY_FOR_ARCHS= amd64 i386 powerpc powerpc64 powerpc64le powerpcspe
ONLY_FOR_ARCHS_REASON= requires SSE2 or AltiVec instructions
USES= compiler:c11 gmake perl5 python:3.5+,test shebangfix
GNU_CONFIGURE= yes
MAKE_ARGS= V=1
TEST_TARGET= check
USE_PERL5= test
SHEBANG_GLOB= *.pl *.py
SHEBANG_FILES= easel/devkit/*
OPTIONS_DEFINE= DOCS EXAMPLES TEST
DOCFILES= Userguide.pdf
EXAMPLES= 7LESS_DROME HBB_HUMAN MADE1.hmm MADE1.sto \
Pkinase.hmm Pkinase.sto dna_target.fa fn3.hmm fn3.sto \
globins4.hmm globins4.sto globins45.fa
TEST_VARS= use_perl5=build
TEST_BUILD_DEPENDS= ${PYTHON_VERSION}:lang/python${PYTHON_SUFFIX}
post-build-TEST-on: pre-test do-test
pre-test:
${FIND} ${WRKSRC} -type f \( -name Makefile -or -name sqc \) -exec ${GREP} -q 'python3 ' {} \; -print | ${XARGS} ${SED} -i.bak 's/python3 /${PYTHON_VERSION} /'
post-install:
@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*
post-install-DOCS-on:
@${MKDIR} ${STAGEDIR}${DOCSDIR}
${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR}
post-install-EXAMPLES-on:
@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
.include <bsd.port.mk>
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