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PORTNAME= igv
DISTVERSIONPREFIX= v
DISTVERSION= 2.9.4
CATEGORIES= biology java
MASTER_SITES= http://software.broadinstitute.org/software/igv/sites/cancerinformatics.org.igv/files/images/:img
DISTFILES= tools.png:img
DIST_SUBDIR= ${PORTNAME}-${DISTVERSION}
EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}
MAINTAINER= yuri@FreeBSD.org
COMMENT= Visualization tool for genomic datasets
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/license.txt
BUILD_DEPENDS= openjfx14>0:java/openjfx14 \
gradle:devel/gradle
RUN_DEPENDS= openjfx14>0:java/openjfx14
USES= gettext-runtime
USE_JAVA= yes
USE_GITHUB= yes
GH_ACCOUNT= igvteam
JAVA_VERSION= 11
NO_ARCH= yes
MAKE_ENV+= GRADLE_USER_HOME=${WRKDIR}
SUB_FILES= ${PORTNAME}.sh
DESKTOP_ENTRIES="IGV" "Integrative Genomics Viewer" "${PREFIX}/share/pixmaps/igv.png" "${PORTNAME}" \
"Biology;Science;" true
# to rebuild the deps archive:
# 1. set DEV_UPDATE_MODE=yes
# 2. make makesum build
# 3. upload the *-deps archive
# 4. set DEV_UPDATE_MODE=no
# 5. make clean makesum
DEV_UPDATE_MODE= no
DEPS_CACHE_DIR= ${WRKDIR}
MAKE_ENV+= JAVA_HOME=${JAVA_HOME}
SUB_LIST= JAVA_HOME=${JAVA_HOME}
.if (${DEV_UPDATE_MODE} == "yes")
post-build:
@cd ${DEPS_CACHE_DIR} && ${TAR} czf ${DISTDIR}/${DIST_SUBDIR}/${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX} gradle-${PORTNAME}
@${ECHO} "(!!!) Please upload the deps archive: ${DISTDIR}/${DIST_SUBDIR}/${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX}"
.else
MASTER_SITES+= LOCAL/yuri/:deps
DISTFILES+= ${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX}:deps
GRADLE_ARGS= --offline
post-extract: # need a separate extract step because the cache is in /tmp, and not under work/ like with maven
@cd ${DEPS_CACHE_DIR} && ${TAR} xzf ${DISTDIR}/${DIST_SUBDIR}/${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX}
.endif
do-build:
cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle \
--gradle-user-home ${DEPS_CACHE_DIR}/gradle-${PORTNAME} --project-cache-dir ${DEPS_CACHE_DIR}/gradle-${PORTNAME} \
${GRADLE_ARGS} --build-cache --stacktrace createDist
do-install:
${INSTALL_SCRIPT} ${WRKDIR}/${PORTNAME}.sh ${STAGEDIR}${PREFIX}/bin/${PORTNAME}
cd ${WRKSRC}/build/IGV-dist/lib && ${COPYTREE_SHARE} ./ ${STAGEDIR}${JAVAJARDIR}/${PORTNAME}
${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/tools.png ${STAGEDIR}${PREFIX}/share/pixmaps/${PORTNAME}.png
.include <bsd.port.mk>
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