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PORTNAME= infernal
PORTVERSION= 1.1.3
CATEGORIES= biology
MASTER_SITES= http://eddylab.org/infernal/
MAINTAINER= mzaki@e-mail.ne.jp
COMMENT= Search sequence databases for structural RNA homologs
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
ONLY_FOR_ARCHS= amd64 i386 powerpc powerpc64 powerpc64le powerpcspe
ONLY_FOR_ARCHS_REASON= requires SSE2 or AltiVec instructions
USES= compiler:c11 gmake perl5 python:3.5+,test shebangfix
GNU_CONFIGURE= yes
MAKE_ARGS= V=1
TEST_TARGET= check
USE_PERL5= test
SHEBANG_GLOB= *.pl *.py
SHEBANG_FILES= easel/devkit/*
OPTIONS_DEFINE= DOCS EXAMPLES TEST
DOCFILES= Userguide.pdf
EXAMPLES= 5S_rRNA.c.cm 5S_rRNA.sto \
Cobalamin.c.cm Cobalamin.fa Cobalamin.sto \
metag-example.fa minifam-metag.out minifam.cm \
minifam.cm.i1f minifam.cm.i1i minifam.cm.i1m minifam.cm.i1p \
mrum-genome.fa mrum-tRNAs10.fa mrum-tRNAs10.out \
tRNA5-hand.c.cm tRNA5-hand.sto tRNA5-mrum.out \
tRNA5-noss.sto tRNA5.c.cm tRNA5.sto
TEST_VARS= use_perl5=build
TEST_BUILD_DEPENDS= ${PYTHON_VERSION}:lang/python${PYTHON_SUFFIX}
post-build-TEST-on: pre-test do-test
pre-test:
${FIND} ${WRKSRC} -type f \( -name Makefile -or -name sqc \) -exec ${GREP} -q 'python3 ' {} \; -print | ${XARGS} ${SED} -i.bak 's/python3 /${PYTHON_VERSION} /'
post-install:
@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*
post-install-DOCS-on:
@${MKDIR} ${STAGEDIR}${DOCSDIR}
${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR}
post-install-EXAMPLES-on:
@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
.include <bsd.port.mk>
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