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PORTNAME= iqtree
DISTVERSIONPREFIX= v.
DISTVERSION= 2.3.4
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org
COMMENT= Efficient phylogenomic software by maximum likelihood
WWW= http://www.iqtree.org/
LICENSE= GPLv2
LICENSE_FILE= ${WRKSRC}/LICENSE
BROKEN_aarch64= fails to compile: unrecognized command line option '-msse3'
BROKEN_armv6= fails to compile: unrecognized command line options '-m32' and '-msse3'
BROKEN_armv7= fails to compile: unrecognized command line options '-m32' and '-msse3'
BROKEN_i386= ld: error: unable to find library -latomic (see bug 230888)
BROKEN_powerpc64= fails to build: GCC version must be at least 4.8!
LIB_DEPENDS= libboost_filesystem.so:devel/boost-libs
USES= cmake eigen:3
USE_GITHUB= yes
GH_PROJECT= iqtree2
GH_TUPLE= tothuhien:lsd2:26ba127:iqtree2/lsd2
PLIST_FILES= bin/iqtree
PORTEXAMPLES= custom_distributions.txt example.cf example.nex example.phy \
models.nex tree.nwk
OPTIONS_DEFINE= EXAMPLES
do-install:
${INSTALL_PROGRAM} ${BUILD_WRKSRC}/iqtree2 ${STAGEDIR}${PREFIX}/bin/iqtree
do-install-EXAMPLES-on:
@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
${INSTALL_DATA} ${WRKSRC}/example/* ${STAGEDIR}${EXAMPLESDIR}
.include <bsd.port.mk>
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