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# Created by: Tony Maher
# $FreeBSD$
PORTNAME= mummer
PORTVERSION= 3.23
CATEGORIES= biology
MASTER_SITES= SF
DISTNAME= MUMmer${PORTVERSION}
MAINTAINER= sylvio@FreeBSD.org
COMMENT= A modular system for rapid whole genome alignment
USES= gmake
PROGRAMS= annotate combineMUMs delta-filter gaps \
mgaps mummer repeat-match show-aligns \
show-coords show-diff show-snps show-tiling
SCRIPTS= dnadiff exact-tandems mapview mummerplot nucmer \
nucmer2xfig promer run-mummer1 run-mummer3
DOCUMENTS= COPYRIGHT INSTALL LICENSE README
NO_STAGE= yes
OPTIONS_DEFINE= DOCS
.include <bsd.port.options.mk>
do-install:
.for program in ${PROGRAMS}
(cd ${WRKSRC} && ${INSTALL_PROGRAM} ${program} ${PREFIX}/bin)
.endfor
.for script in ${SCRIPTS}
(cd ${WRKSRC} && ${INSTALL_SCRIPT} ${script} ${PREFIX}/bin)
.endfor
.if ${PORT_OPTIONS:MDOCS}
@${MKDIR} ${DOCSDIR}
.for doc in ${DOCUMENTS}
(cd ${WRKSRC} && ${INSTALL_DATA} ${doc} ${DOCSDIR})
.endfor
.endif
.include <bsd.port.mk>
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